Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20139
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   7.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 242 LVGRRAYGPPVGEWLPL 192
           L+G R   PP  +W PL
Sbjct: 408 LIGSRRTSPPPEDWKPL 424


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 584 RLATMSRLHELTTLT 628
           R AT+++LH  TT+T
Sbjct: 422 RRATLAQLHNFTTMT 436


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 272 VLSRLFFLIALVGRRAYGPPVG 207
           VLSR+  ++A   +R  GPP G
Sbjct: 381 VLSRIGIILASPLKREGGPPTG 402


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 710 VWRSAVASLARASFRV 757
           VWR  ++S A   FRV
Sbjct: 401 VWRETISSTATLGFRV 416


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 710 VWRSAVASLARASFRV 757
           VWR  ++S A   FRV
Sbjct: 316 VWRETISSTATLGFRV 331


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 710 VWRSAVASLARASFRV 757
           VWR  ++S A   FRV
Sbjct: 635 VWRETISSTATLGFRV 650


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = +1

Query: 199 NHSPTGGPYARLPTRAIRKKSLDNTTTLTYSISRNLYRPSSL 324
           + + T G +       +   S+D +T +    + NL++P S+
Sbjct: 721 SRTSTAGQFPTNVATTVTSMSIDQSTVIQTGANVNLWQPLSV 762


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,815
Number of Sequences: 438
Number of extensions: 4581
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)