Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20139
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to ...    30   1.9  
At1g21650.1 68414.m02710 preprotein translocase secA family prot...    30   1.9  
At1g25530.1 68414.m03170 lysine and histidine specific transport...    28   5.9  
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat...    28   7.7  
At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-g...    28   7.7  

>At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to
           embryonic flower 1 [Arabidopsis thaliana] GI:15430697
          Length = 1096

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 271 YCPGSFSLLPS*ADGRTAHLLVSGYRCPWTSAMP 170
           Y P  F + P   + R + +  SG+ C W   +P
Sbjct: 705 YVPSPFGIFPPTQENRASSIRFSGHNCQWLGNLP 738


>At1g21650.1 68414.m02710 preprotein translocase secA family protein
            contains Pfam profiles: PF01043 SecA protein, amino
            terminal region, PF00400 WD domain, G-beta repeat,
            PF00097 zinc finger, C3HC4 type (RING finger)
          Length = 1579

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 590  QGVKTTMNKWDHALTSLRGAFGDSRPPLVYTRS 492
            Q   T   KW+H    +   FG  RP LV T S
Sbjct: 1123 QAFATARGKWEHVRREVEDMFGQGRPVLVGTTS 1155


>At1g25530.1 68414.m03170 lysine and histidine specific transporter,
           putative similar to lysine and histidine specific
           transporter GI:2576361 from [Arabidopsis thaliana];
           contains Pfam profile PF01490: Transmembrane amino acid
           transporter protein
          Length = 440

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 239 VGRRAYGPPVGEWLPLPMDFSNAWGRTVNYSI 144
           +GR A+GP +G W+ LP       G  + Y +
Sbjct: 99  LGRYAFGPKLGPWIVLPQQLIVQVGCNIVYMV 130


>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1124

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
 Frame = -1

Query: 608 EAATWWQGVKTTMN-----KWDHALTSLRGAFGDSRPPLVYTRSCSPTH-----KKQVRK 459
           EA  W+ G+K  ++     KW     S  G   ++  P  YTR  SP H      +  +K
Sbjct: 136 EAEVWFSGLKALISRCHQRKWRTESRS-DGTPSEANSPRTYTRRSSPLHSPFSSNESFQK 194

Query: 458 HNSSSLKLECYY 423
             S+ L+L   Y
Sbjct: 195 EGSNHLRLHSPY 206


>At1g05570.1 68414.m00575 callose synthase 1 (CALS1) /
           1,3-beta-glucan synthase 1 nearly identical to callose
           synthase 1 catalytic subunit [Arabidopsis thaliana]
           GI:13649388
          Length = 1922

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -1

Query: 389 YRWTWCTKHS*TLKY*FLSHYHSELGRYKLRLIEYVKVVVLSRLFFLIALVGR 231
           Y W   +  S T+K  F  H H+    + + ++ Y+   +LS L FL   + R
Sbjct: 545 YSWKNASGFSQTIKNWFGGHSHNSPSLFIVAILIYLSPNMLSALLFLFPFIRR 597


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,445,804
Number of Sequences: 28952
Number of extensions: 334346
Number of successful extensions: 798
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)