Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20138
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 134 8e-33
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 132 5e-32
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 119 3e-28
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 116 2e-27
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 111 7e-26
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 85 1e-17
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 57 3e-09
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 53 3e-08
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 47 2e-06
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 42 6e-05
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 41 1e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 41 1e-04
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 39 6e-04
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 37 0.003
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 34 0.022
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 33 0.038
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 31 0.12
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 27 1.9
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 2.5
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c... 27 3.3
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 27 3.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 4.4
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 26 5.8
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 26 5.8
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 25 7.7
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 134 bits (325), Expect = 8e-33
Identities = 76/141 (53%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Frame = +2
Query: 257 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 436
GQEDYDRLRPLSYPD+ VIL+CF+VDSPDSL+N+ EKW EV HFC ++PI+LV K DL
Sbjct: 63 GQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADL 122
Query: 437 RNDPATINELRKMKQEPVKPQKAGYG*KD*RVCISGMLCQKQGS--VREVFETATRAAL- 607
RNDP I EL K Q PV ++ G + C + + VREVFE+ATRAA+
Sbjct: 123 RNDPKIIEELSKTNQHPVTTEE-GQAVAQKIGAYKYLECSAKTNEGVREVFESATRAAML 181
Query: 608 ----QVK----KKKKTRCSLL 646
+VK KKK RC LL
Sbjct: 182 KHKPKVKPSSGTKKKKRCILL 202
Score = 109 bits (261), Expect = 5e-25
Identities = 49/61 (80%), Positives = 55/61 (90%)
Frame = +3
Query: 84 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN*VADIEVDGKQVELALWDTLAK 263
+R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFEN VAD+EVDG+ VELALWDT +
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQ 64
Query: 264 K 266
+
Sbjct: 65 E 65
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 132 bits (319), Expect = 5e-32
Identities = 72/139 (51%), Positives = 89/139 (64%), Gaps = 9/139 (6%)
Frame = +2
Query: 257 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 436
GQEDYDRLRPLSYPD+ V+L+CFSVD+P+SL+N+ EKW EV HFC N+PI+LVG K DL
Sbjct: 63 GQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDL 122
Query: 437 RNDPATINELRKMKQEPVKPQKAGYG*KD*RVCISGMLCQKQ--GSVREVFETATRAAL- 607
RNDP TI EL K Q+P+ ++ G + C + V EVFETA RA++
Sbjct: 123 RNDPKTIEELSKTSQKPITFEE-GQVVAQKIGAYKYLECSAKLNEGVNEVFETAARASML 181
Query: 608 ------QVKKKKKTRCSLL 646
K KKK C LL
Sbjct: 182 KFKPASVPKTKKKKHCILL 200
Score = 108 bits (260), Expect = 6e-25
Identities = 48/61 (78%), Positives = 55/61 (90%)
Frame = +3
Query: 84 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN*VADIEVDGKQVELALWDTLAK 263
+R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFEN VAD+EVDG+ +ELALWDT +
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQ 64
Query: 264 K 266
+
Sbjct: 65 E 65
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 119 bits (287), Expect = 3e-28
Identities = 62/134 (46%), Positives = 84/134 (62%), Gaps = 4/134 (2%)
Frame = +2
Query: 257 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 436
GQEDYDRLRPLSYP TDV L+CFSV SP S EN+ EKW PEV H CP VP ++VG + DL
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDL 119
Query: 437 RNDPATINELRKMKQEPVKPQKAGYG*KD*RVCISGMLCQ--KQGSVREVFETATRAALQ 610
R+DP+ +L + Q P+ ++ ++ + + C Q ++ VF+ A AAL
Sbjct: 120 RDDPSVQQKLARQHQHPLTHEQGERLARE-LGAVKYVECSALTQKGLKNVFDEAIVAALD 178
Query: 611 --VKKKKKTRCSLL 646
V KKK++C +L
Sbjct: 179 PPVPHKKKSKCLVL 192
Score = 61.7 bits (143), Expect = 1e-10
Identities = 27/58 (46%), Positives = 39/58 (67%)
Frame = +3
Query: 93 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN*VADIEVDGKQVELALWDTLAKK 266
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+N + + + L L+DT ++
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQE 62
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 116 bits (280), Expect = 2e-27
Identities = 63/137 (45%), Positives = 83/137 (60%), Gaps = 3/137 (2%)
Frame = +2
Query: 257 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 436
GQE+Y+RLRP+SY +IL+ F++DSPDSLEN+ KW E+ CPNVP ILVG K DL
Sbjct: 65 GQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVPFILVGMKADL 124
Query: 437 RNDPATINELRKMKQEPVKPQKAGYG*KD*RV-CISGMLCQK--QGSVREVFETATRAAL 607
R+DP I E+R+ Q VK Q+A + R+ M C V +VFE ATRAAL
Sbjct: 125 RSDPVAIEEMRRRNQNFVKSQQAELVAQ--RIGARKYMECSSLTGDGVDDVFEAATRAAL 182
Query: 608 QVKKKKKTRCSLL*CAV 658
V+ + + S C +
Sbjct: 183 TVRDSENDKSSTKCCII 199
Score = 89.4 bits (212), Expect = 4e-19
Identities = 41/61 (67%), Positives = 48/61 (78%)
Frame = +3
Query: 84 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN*VADIEVDGKQVELALWDTLAK 263
IR+KLV+VGDGACGKT LL VF+ FP YVPTVFEN V+D VDGK V+LALWDT +
Sbjct: 7 IRRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQ 66
Query: 264 K 266
+
Sbjct: 67 E 67
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 111 bits (268), Expect = 7e-26
Identities = 50/83 (60%), Positives = 60/83 (72%)
Frame = +2
Query: 257 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 436
GQE+YDRLRPLSYP+++VIL+CFS+D P SL N+ EKW PEV+HFCP PI+LVG K DL
Sbjct: 73 GQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIVLVGLKADL 132
Query: 437 RNDPATINELRKMKQEPVKPQKA 505
R D LR PV Q+A
Sbjct: 133 RKDRNATEVLRTQGLTPVTYQQA 155
Score = 87.8 bits (208), Expect = 1e-18
Identities = 42/71 (59%), Positives = 50/71 (70%), Gaps = 2/71 (2%)
Frame = +3
Query: 60 ESSGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN*VADIEV--DGKQV 233
+ SG + KKLV+VGDG CGKTCLLIVFS FPE YVPTVFEN + DI + K +
Sbjct: 5 KKSGSKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVI 64
Query: 234 ELALWDTLAKK 266
ELALWDT ++
Sbjct: 65 ELALWDTAGQE 75
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 84.6 bits (200), Expect = 1e-17
Identities = 38/61 (62%), Positives = 46/61 (75%)
Frame = +2
Query: 257 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 436
GQE+YD+LR LSY DT VI++CF+VDS DSLEN+ KW PEV CP V ++LV K DL
Sbjct: 70 GQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLVALKCDL 129
Query: 437 R 439
R
Sbjct: 130 R 130
Score = 81.4 bits (192), Expect = 1e-16
Identities = 36/61 (59%), Positives = 47/61 (77%)
Frame = +3
Query: 84 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN*VADIEVDGKQVELALWDTLAK 263
I +K+VI+GDGA GKT LL VF+K FP+VY PT+FEN + DI VDG +EL+LWDT +
Sbjct: 12 IYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQ 71
Query: 264 K 266
+
Sbjct: 72 E 72
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +3
Query: 513 AEKINAFAYLECSAK 557
A+KINA YLECSAK
Sbjct: 152 AKKINAVRYLECSAK 166
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 56.8 bits (131), Expect = 3e-09
Identities = 23/59 (38%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Frame = +3
Query: 93 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FEN*VADIEVDGKQVELALWDTLAKK 266
KL+++GD GK+CLL+ FS+D F ++ T+ + + IE+DGK+++L +WDT ++
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 53.2 bits (122), Expect = 3e-08
Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Frame = +3
Query: 93 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FEN*VADIEVDGKQVELALWDTLAKK 266
KL+++GD GK+CLL+ F+ D + E Y+ T+ + + E++GK V+L +WDT ++
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQE 68
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 47.2 bits (107), Expect = 2e-06
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 93 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN*VA-DIEVDGKQVELALWDTLAKK 266
K+VI+GD GKTCL+ F +F Y T+ + + D+ VD K V L LWDT ++
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 42.3 bits (95), Expect = 6e-05
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +3
Query: 93 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN*VADIEVDGKQVELALWDTLAKK 266
KLV+VGDG GK+ L I + F + Y PT+ ++ E+DG+ L + DT ++
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQE 67
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 41.1 bits (92), Expect = 1e-04
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = +3
Query: 75 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FEN*VADIEVDGKQVELAL 245
+ I +KLV++GD A GK+ L++ F KDQF + T+ F I+ + V+L +
Sbjct: 10 VVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPID-ENTSVKLEI 68
Query: 246 WDTLAKK 266
WDT ++
Sbjct: 69 WDTAGQE 75
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 257 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKD 433
GQE Y L P+ Y + + ++ + + SLE + W E++ P + I L GNK D
Sbjct: 73 GQERYKSLAPMYYRNANCAIVVYDITQAASLEK-AKSWIKELQRQAPEGIVIALAGNKLD 131
Query: 434 LRNDPATINE 463
L + + +
Sbjct: 132 LAQERRAVEK 141
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 41.1 bits (92), Expect = 1e-04
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +2
Query: 257 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 436
GQE LR Y ++ F V S + +N+P W V+ C N+PI+L GNK D+
Sbjct: 67 GQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVR-VCENIPIVLCGNKVDV 125
Query: 437 R 439
+
Sbjct: 126 K 126
Score = 29.5 bits (63), Expect = 0.47
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 93 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FEN*VADIEVDGKQVELALWDTLAKK 266
KLV+VGDG GKT + +F + Y+ T+ E + ++ +WDT ++
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQE 69
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 39.1 bits (87), Expect = 6e-04
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +3
Query: 81 AIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN*VA-DIEVDGKQVELALWDT 254
++RK KLV +G+ + GKT L+ F DQF Y T+ + ++ + ++ + V L LWDT
Sbjct: 8 SLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 67
Query: 255 LAKK 266
++
Sbjct: 68 AGQE 71
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +3
Query: 93 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FEN*VADIEVDGKQVELALWDTLAKK 266
K V++GD GK+ LL+ F++++F T+ E +I +D K+++ +WDT ++
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQE 70
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 33.9 bits (74), Expect = 0.022
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Frame = +3
Query: 93 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FEN*VADIEVDG--KQVELALWDTL 257
K+V+ G GK+CLL F K+Q+ + TV F + + + + K+++L +WDT
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 258 AKK 266
++
Sbjct: 71 GQE 73
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 33.1 bits (72), Expect = 0.038
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 75 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN*VADIEVDGKQVELALWD 251
MA I+ +++ ++G + GK+ L + + ++ F E Y PT+ +I+ G++ + D
Sbjct: 1 MAPIKSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIID 60
Query: 252 T 254
T
Sbjct: 61 T 61
Score = 28.7 bits (61), Expect = 0.82
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 257 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKD 433
GQ++Y L ++ +S+ S S E + + H VPI++VGNK D
Sbjct: 63 GQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSD 122
Query: 434 LRNDPATINE 463
L A E
Sbjct: 123 LHMQRAVTAE 132
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 93 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN*V-ADIEVDGKQVELALWD 251
K+ ++GD + GKT L++ + + F E T+ N + I + ++ ++WD
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWD 65
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 311 SHPYLDTRAAAADRNLLGQGIPQSQFH 231
SHPY + N +GQ I SQFH
Sbjct: 193 SHPYANASFPHDPANAMGQQIDSSQFH 219
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 314 LMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK-KDLRN 442
++C S E + W P + NVPI+L NK +DL N
Sbjct: 77 VICLVYSDNYSYERVSIFWLPYFRSLGVNVPIVLCENKSEDLDN 120
>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 473
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 308 HPYLDTRAAAADRNLLGQGIPQ 243
HPYLD A R+L+G+ I Q
Sbjct: 427 HPYLDRNIWQAKRHLVGEAIDQ 448
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -3
Query: 254 GIPQSQFHLFSIHFDVGNLILKHCRHVYFRELILAEH 144
G QS+ +IH + +++H ++ YF++L+ +H
Sbjct: 325 GSLQSEHTSLNIHTGLAETLVQHTKNNYFQKLLQLQH 361
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 57 PESSGPMAAIRKK--LVIVGDGACGKTCLL 140
P + I KK ++VGD A GKTC+L
Sbjct: 1857 PVLESVITCINKKWPCILVGDTATGKTCIL 1886
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 142 ISRHVLPHAPSPTITNFLRIAAIGPED 62
I H+LP+ TITNF R+ G D
Sbjct: 188 IENHLLPNELPLTITNFFRLGTPGFTD 214
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -1
Query: 250 SHRASSTCFPSTSMSAT*FSNTVGTYTSGN*SLLNTISR 134
S+ ++S +PSTSMSA+ S + TS + S ++ SR
Sbjct: 502 SYSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSR 540
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 341 DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 439
DS E + WTPE+ + V +I + +K +R
Sbjct: 367 DSKEQLLAYWTPEITNQPARVALISIPSKSTIR 399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,926,970
Number of Sequences: 5004
Number of extensions: 60701
Number of successful extensions: 233
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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