Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20137
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2070

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = +3

Query: 129 ILIIIKQLITHNT*DII*KCIDYCLSVCIMFTNIICFLNLTNYK 260
           +LII++ +I H    I+ + ID+C  V I+F+   C L +T YK
Sbjct: 860 VLIILQGIIDHAVLIILQEIIDHC--VLILFS---CSLEITGYK 898


>SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +3

Query: 195 YCLSVCIMFTNIICFLNLTNYKSYTAAS-----RRRAWGMWIFKIIKYPLLKFSSTLHFF 359
           Y + V  + T +I  ++L  Y++ T +S      RR   + I      PLL FSS+LHFF
Sbjct: 111 YTVPVVSLLTLLI--ISLERYRAVTRSSCAAPPSRRQIAITILISWLIPLLMFSSSLHFF 168

Query: 360 N 362
           +
Sbjct: 169 D 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,757,843
Number of Sequences: 59808
Number of extensions: 345032
Number of successful extensions: 473
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)