Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20137
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    27   0.23 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   3.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   5.0  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 125 ANFNHYKTVNNS*YIGYNLEVY 190
           +N+N+Y   NN+ Y  YN ++Y
Sbjct: 325 SNYNNYNNYNNNNYNNYNKKLY 346


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = -3

Query: 303 STYPKLSSGMLRYTIYN*LGLKNI*Y**T*YIQINNNQYTSKLYPMYY 160
           S  PK+ S +   TI+N     N  Y        NNN Y  KLY   Y
Sbjct: 76  SREPKIISSLSNKTIHN---NNNYKYNYNNKYNYNNNNYNKKLYYKNY 120


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 197 IINTLLNYILCIMSY*LFYND*NWPKVIINYIFTKTLLDLIIDTIF 60
           IIN +   +  I    + +   +W +V   YI+ K + D++ D  F
Sbjct: 411 IINNIFKNMSQIEREAITFQYTDWEEVYNGYIYQKMVADVVGDYFF 456


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 197 IINTLLNYILCIMSY*LFYND*NWPKVIINYIFTKTLLDLIIDTIF 60
           IIN +   +  I    + +   +W +V   YI+ K + D++ D  F
Sbjct: 411 IINNIFKNMSQIEREAITFQYTDWEEVYNGYIYQKMVADVVGDYFF 456


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 601 VTIVNARLYSISLNIIYNFKY 663
           VT +++R  + SL +IY +KY
Sbjct: 17  VTDIHSRNLTNSLKVIYEWKY 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,206
Number of Sequences: 438
Number of extensions: 4315
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)