Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20136
(781 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 31 0.19
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 27 3.0
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 3.0
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 4.0
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 4.0
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 7.0
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 26 7.0
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 9.2
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 9.2
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 9.2
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 9.2
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 9.2
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 25 9.2
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 9.2
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 9.2
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = +3
Query: 282 PAEAHRDSGEEPASGQRRYRSGEGKEQIPERHRELRSH*AEAHGNVREELAPHKG 446
P H + GE + GE P +H EL H H E+ HKG
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.1 bits (57), Expect = 3.0
Identities = 17/74 (22%), Positives = 31/74 (41%)
Frame = +1
Query: 244 EVFIDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCE 423
E + + FD +K +EK L + AE EK++ N +E+ + +
Sbjct: 67 EAKLSAKKSFDEELVKFHNLEEKLQLTETKCRNAESEKSRVENELEDLTSSLFEEANRMV 126
Query: 424 KNSLPTKDVIEQEK 465
N+ K+ + EK
Sbjct: 127 ANA--RKETVASEK 138
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 340 EAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVIEQEKSA 471
E EKE K ENF+ + + E E+ L +EQEK+A
Sbjct: 445 EMEKELQKIR---ENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 234 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 103
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 4.0
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = +1
Query: 235 EDPEVFIDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 414
ED E + G E + SSQ + + E P P E EK + +EN T ++ +
Sbjct: 159 EDLETTLKGDENYSSSQKEIYDNDETIPKPP----SPEVEKIETSTSVENAYITNSQYND 214
Query: 415 TCEKNSLPTKDVI 453
T + T D+I
Sbjct: 215 TLDMED-QTSDLI 226
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 7.0
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +2
Query: 50 SSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 229
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 230 TEKTQKSLS 256
+KS++
Sbjct: 82 NITNKKSVT 90
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.8 bits (54), Expect = 7.0
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 470 LEPLLYNSYSQMYSLVSPYFNIDVSQIDLRRPLQVLFLFLYNG 598
L +LY+S +M S V Y +DVS DL R V +L +G
Sbjct: 877 LYEILYSSEEEMPSNVIFYETMDVSLSDLDRKRLVRLRWLVDG 919
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 9.2
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +2
Query: 452 LSKRNQLEPLLYNSYSQMYSLVSPYFNIDVSQID--LRRPLQVL-FLFLYNGNTAWAMAA 622
LS+RN LL +S ++ V+P +++ + ++ L + + F NG + +
Sbjct: 803 LSERNASSNLLNSSLFSSFNSVNPLISLEPNPLNRTLNNSVNLTDFGRKPNGLHSPSSLL 862
Query: 623 YSNPGFYSNPNVSHALRQ*TASGRHKP 703
++ F NPN H+L + + H P
Sbjct: 863 SNSNNFGLNPNARHSLSRANSPVHHYP 889
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 349 KEKNKFLNGIENFDPTKLKHTETCEKN 429
K + K L G ++ DP L+ + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 243 WVFSVATSSADGSTIFSLVSTSRRQL 166
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 243 WVFSVATSSADGSTIFSLVSTSRRQL 166
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 243 WVFSVATSSADGSTIFSLVSTSRRQL 166
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 373 GIENFDPTKLKHTETCEKNSLPTKDVIEQE 462
G+E P + H T +NSLP E E
Sbjct: 380 GLEVISPKEFPHRTTSSRNSLPNNTTKELE 409
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 243 WVFSVATSSADGSTIFSLVSTSRRQL 166
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 246 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 148
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,666
Number of Sequences: 5004
Number of extensions: 62767
Number of successful extensions: 237
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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