Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20135
         (664 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   1.3  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   1.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   1.3  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   6.8  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   6.8  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   6.8  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   9.0  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -1

Query: 466 EYHLERL---RRRADTDHSVVLSIKII*QWF 383
           E+H  R    RRR +  H++VLS + I  WF
Sbjct: 251 EFHYNRYLTRRRRIEIAHTLVLSERQIKIWF 281


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -1

Query: 466 EYHLERL---RRRADTDHSVVLSIKII*QWF 383
           E+H  R    RRR +  H++VLS + I  WF
Sbjct: 251 EFHYNRYLTRRRRIEIAHTLVLSERQIKIWF 281


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -1

Query: 466 EYHLERL---RRRADTDHSVVLSIKII*QWF 383
           E+H  R    RRR +  H++VLS + I  WF
Sbjct: 251 EFHYNRYLTRRRRIEIAHTLVLSERQIKIWF 281


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 374 PSPEPLSNYLDAQYYGVISIGTPP 445
           P P P+  +  A+Y+   + G PP
Sbjct: 163 PPPPPVYTHHYARYHPYPNFGVPP 186


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 520 CWCSALFGRHPEVGGSGVEYHLERLR 443
           C+C   FGR  +  G  +  +L  L+
Sbjct: 425 CYCPIKFGRKADPNGDYIRKYLPVLK 450


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 514 TNIACLLHNKYDSRKSKTYVANGTQFAIQYGSG 612
           TN     +N Y    +  Y+++ T    Q+G+G
Sbjct: 246 TNSTTNCYNNYPYYSNMDYLSSSTMSHSQFGNG 278


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 598 QYGSGSLSGFLSTDDVTV 651
           Q+G G  S +L  D VTV
Sbjct: 126 QFGVGFYSAYLVADKVTV 143


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,209
Number of Sequences: 336
Number of extensions: 3595
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)