Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20135
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    28   1.4  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    27   3.2  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   4.2  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   7.4  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    25   9.7  

>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 398 YLDAQ-YYGVISIGTPPQSFKVVFDTGSSNLWVPSK 502
           Y DA  Y+  +++G+  + + +  DTGS   WV +K
Sbjct: 70  YTDAGGYFANLTLGSNERVYSLTLDTGSPYTWVTAK 105


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 505 LFGRHPEVGGSGVEYHLERLRRRADTDHSVVLSIK 401
           +FG + E GG G     +R RR +D  H   +S++
Sbjct: 95  MFGMNFEAGGPGKNVPRDRKRRGSDVIHDYEISLE 129


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 427 QYRHAAAVVQGGIRHRILQPLGAFQKVHYTNIA--CLLHNKYDSRKSKTYVANGTQFAIQ 600
           +Y  + AV+   ++H  L    +F  ++YT I    LLH  + +  SK ++++  Q+   
Sbjct: 302 KYESSKAVLVFAVKHLFLMQRPSFVSLNYTTIVDIILLHQSHST--SKEWLSSLEQYHCT 359

Query: 601 Y 603
           Y
Sbjct: 360 Y 360


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 282 TLYSAITELGSAPKKIKISFPLLFLEAATRRLCN 181
           TLY+    L S PK   +S  L FL+ +T  L N
Sbjct: 881 TLYANGNRLSSFPKNEALSKSLRFLDISTNNLQN 914


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 347 LRLKYDVTGPSPEPLSNYLDAQYYGVISIGTPP 445
           LR  Y VT P  + ++N L A+Y     I TPP
Sbjct: 18  LRSGYSVTAPVSKSMANVLWARYAST-RIKTPP 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,389
Number of Sequences: 5004
Number of extensions: 56873
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)