Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20134
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    30   0.37 
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    29   0.65 
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    29   0.86 
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.1  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         27   2.6  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    27   3.5  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    26   6.0  
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    26   6.0  

>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 466 RSNFTRKSGKWKNSFMRFGRWDPSAVPIEDV 558
           RS+F +    W N F++  R++PS + ++DV
Sbjct: 414 RSSFAKFQSFWNNVFIQAERYEPSIIYLDDV 444


>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 308 RVDDAYCLRFLRCRRFIPALAHKLMVRYEDFRQ 406
           R+DDA  LRFLR R+F    + ++ ++ E +R+
Sbjct: 47  RLDDATLLRFLRARKFNLQQSLEMFIKCEKWRK 79


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 314 DDAYCLRFLRCRRFIPALAHKLMVRYEDFRQNNAY 418
           ++ YCLR L    FIP L  K M +++D  +N A+
Sbjct: 108 ENEYCLRLLASTGFIPVLI-KAMKQFKDRSENVAF 141


>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +2

Query: 254 IIEELRRMVRERGECIPRRVDDAYCLRFLRCRRFIPALAHKLMVRYEDFRQNNAY 418
           ++EE  R++R  G  +      +YC    +C      L   L+  + DFR  + Y
Sbjct: 150 LLEERIRIMRASGRVLVDSYHGSYCGLLKKCHNQAQRLIKLLLADFPDFRDVSVY 204


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = +2

Query: 65  KRLISIRYRLSILRNIAIRLLLY*SGHAVH*HRLPS 172
           K L S  Y LSIL NI +   LY S    H H L S
Sbjct: 51  KCLSSCNYALSILHNICLASFLYLSKCYYHTHILTS 86


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 617 RICSFGCITAISSMNRAQRTTSSIGTALGSQRPNL 513
           ++  FG  TAI + N+  R   ++ +A+  QRP L
Sbjct: 300 KLSDFGLSTAIVTSNQVNRLQHALVSAVNPQRPYL 334


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 603 WLHHSNFIHEQGATNHVFDRHSTGIPASEPHKTI 502
           W H  +F H Q +T H+  R       S+P K I
Sbjct: 73  WAHQYSFFHSQVSTLHLRVRKELDHFTSKPFKNI 106


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -1

Query: 597 HHSNFIHEQGATNHVFDR--HSTGIPASEPHKTILPFSGLSGKVAP 466
           HH  ++ +Q A + +     H T + A      +LPF+G++G   P
Sbjct: 175 HHITYVPKQEAEDTIIKAQVHKTLVSAGPWTGYLLPFTGIAGLCIP 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,141
Number of Sequences: 5004
Number of extensions: 61003
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)