Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20134
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1133 - 10550799-10551137,10552195-10552254,10555693-105574...    30   1.6  
01_01_1135 - 9003823-9004182,9004308-9004367,9004441-9004683,900...    29   3.6  
06_01_0914 - 7047865-7049223                                           29   4.8  
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384...    29   4.8  
01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869...    29   4.8  
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985...    28   6.3  
03_05_0555 + 25555081-25555432,25555488-25555699                       28   6.3  

>07_01_1133 -
           10550799-10551137,10552195-10552254,10555693-10557401,
           10557534-10557616,10577533-10578074
          Length = 910

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 347 DIEEI*DSMRRQRAEGYIHLVRGPCGVAPRLFMPSVRE 234
           DI+EI  +MRR +A GYI   +G   +  R+ +P  +E
Sbjct: 360 DIQEIKKNMRRGKAIGYIEDEKGTVWLGERICVPDNKE 397


>01_01_1135 -
           9003823-9004182,9004308-9004367,9004441-9004683,
           9005207-9005305,9005807-9005986,9006090-9006164
          Length = 338

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 257 IEELRRMVRERG-ECIPRRVDDAYCLRFLRCRRFIPALAHKLM 382
           I +LR+ + E   E I   + DA CLRFLR R +    A K+M
Sbjct: 26  INDLRKELGEHSSEEIQDFLSDASCLRFLRARNWNVQKASKMM 68


>06_01_0914 - 7047865-7049223
          Length = 452

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 680 GSNASRV*CSTPSRSTMMVTPRICSF 603
           G  A+R+ C TP+ +T   T  +CSF
Sbjct: 10  GHGATRLSCPTPATTTTTTTSNLCSF 35


>03_01_0510 +
           3841630-3844089,3844235-3844358,3844641-3844786,
           3844861-3844958,3845313-3845502
          Length = 1005

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 472 NFTRKSGKWKNSFMRFGRWDPSAVPIEDVVRCALFMDEIAVMQPKLQI 615
           +F   SG+WK     F R+       EDVV     MDE+ V QP  ++
Sbjct: 129 SFNHSSGRWKFEVDHFSRFGLVDEEEEDVV-----MDEVVVRQPIAEV 171


>01_01_1098 -
           8691312-8692430,8692640-8693509,8694522-8696105,
           8696199-8696258,8696336-8696414,8696494-8696555,
           8697129-8697204,8697367-8697419,8698181-8698270,
           8698411-8698458
          Length = 1346

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 578 MNRAQRTTSSIGTALGSQRPNLIKLFFHFPDFRVK 474
           M +AQR  ++ G A GS+  ++   F+H  D  VK
Sbjct: 468 MRKAQRAKTTSGAAAGSEPSDISAAFWHPTDLAVK 502


>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
            27298701-27298766,27299151-27302660,27311604-27312224
          Length = 1676

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 347  DIEEI*DSMRRQRAEGYIHLVRGPCGVAPRLFMPSVRE 234
            DI+EI  +MRR +A GY+   +G   +  R+ +P  +E
Sbjct: 1305 DIQEIKKNMRRGKAIGYVVDEQGTVWLGERICVPDNKE 1342


>03_05_0555 + 25555081-25555432,25555488-25555699
          Length = 187

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 377 ICELKQE*TADIEEI*DSMRRQRAEGYIHLVRGPCG 270
           I +L+QE  AD+       RR +A G + LV G CG
Sbjct: 15  IQQLRQEDEADLSRRSRGTRRSQAVGVVPLVDGGCG 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,033,433
Number of Sequences: 37544
Number of extensions: 401096
Number of successful extensions: 970
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)