Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20134
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)            30   2.1  
SB_9858| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.9  
SB_17843| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
          Length = 921

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +2

Query: 296 CIPRRVDDAYCLRFLRCRRFIPALAHKLMVRYEDFRQNNAYLYNCDPF 439
           C+P +  ++ C ++ RC+     LA+       D +    Y +NC  F
Sbjct: 267 CVPNKEGNSICSKYYRCKACKKVLAYSKR-HPRDHKCGEVYCFNCKDF 313


>SB_9858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 116 SLYSLKWITYNVSILIVLFMYCFMQFTFTEFAARALSC 3
           +LY LK + Y ++  I  F+Y      F +F A+ L C
Sbjct: 270 ALYQLKHVMYLLNATINPFLYTLQDKQFRKFMAKQLCC 307


>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -3

Query: 427  VVQVRVVLAKVFVTHHQF-VS*SRNKPPTSKKSETVCVVNA 308
            VVQ R+VL K+ +++H+  +  +R + P  + +E +C + A
Sbjct: 1031 VVQKRIVLIKLRISNHKLEIEAARYRKPYKRANERICPICA 1071


>SB_17843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 143 GRFSTITT*SLYSLKWITYNVSILIVLFMYCFMQ 42
           G F+T T      L  + +  S +I++FM+C++Q
Sbjct: 31  GAFATYTNAERQILTAVKWKFSFIILVFMFCYVQ 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,370,594
Number of Sequences: 59808
Number of extensions: 476928
Number of successful extensions: 1083
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)