Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20134
(705 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC101377-1|AAI01378.1| 327|Homo sapiens retinaldehyde binding p... 48 4e-05
BC101376-1|AAI01377.1| 327|Homo sapiens retinaldehyde binding p... 48 4e-05
AL591428-2|CAI12306.1| 327|Homo sapiens protein ( to hypothetic... 48 4e-05
AK091641-1|BAC03711.1| 167|Homo sapiens protein ( Homo sapiens ... 46 1e-04
BC042617-1|AAH42617.1| 354|Homo sapiens retinaldehyde binding p... 44 5e-04
AY094971-1|AAM15733.1| 354|Homo sapiens cellular retinaldehyde-... 44 5e-04
Z97053-6|CAI19686.1| 342|Homo sapiens chromosome 20 open readin... 42 0.003
Z97053-5|CAI19685.1| 279|Homo sapiens chromosome 20 open readin... 42 0.003
BC003071-1|AAH03071.2| 342|Homo sapiens chromosome 20 open read... 42 0.003
AL132772-9|CAI18861.1| 342|Homo sapiens chromosome 20 open read... 42 0.003
AL132772-8|CAI18860.1| 279|Homo sapiens chromosome 20 open read... 42 0.003
Z97053-4|CAO03543.1| 154|Homo sapiens chromosome 20 open readin... 41 0.005
AL132772-7|CAO03334.1| 154|Homo sapiens chromosome 20 open read... 41 0.005
U21938-1|AAA64309.1| 278|Homo sapiens alpha-tocopherol transfer... 36 0.19
D49488-1|BAA08449.1| 278|Homo sapiens alpha-tocopherol transfer... 36 0.19
BC058000-1|AAH58000.1| 278|Homo sapiens tocopherol (alpha) tran... 36 0.19
L34219-1|AAA65123.1| 317|Homo sapiens retinaldehyde-binding pro... 32 2.3
J04213-1|AAA60251.1| 317|Homo sapiens RLBP1 protein. 32 2.3
BC004199-1|AAH04199.1| 317|Homo sapiens retinaldehyde binding p... 32 2.3
BC067529-1|AAH67529.1| 563|Homo sapiens hypothetical protein FL... 31 4.0
BC067528-1|AAH67528.1| 563|Homo sapiens hypothetical protein FL... 31 4.0
BC067526-1|AAH67526.1| 563|Homo sapiens hypothetical protein FL... 31 4.0
AY189288-1|AAO86732.1| 563|Homo sapiens LP9056 protein protein. 31 4.0
AK022746-1|BAB14220.1| 563|Homo sapiens protein ( Homo sapiens ... 31 4.0
>BC101377-1|AAI01378.1| 327|Homo sapiens retinaldehyde binding
protein 1-like 2 protein.
Length = 327
Score = 47.6 bits (108), Expect = 4e-05
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Frame = +2
Query: 257 IEELRRMVRERGECIPRRVDDAYCLRFLRCRRFIPALAHKLMVRYEDFRQNNAYLYN--- 427
I+E+R MV R + R DDA+ LRFLR R+F A +L+ +Y ++RQ N ++
Sbjct: 31 IQEVRDMVITRPDIGFLRTDDAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFK 90
Query: 428 -CDPFGLQRVKNVYGATLPESPENGRIVL 511
DP Q +K+ + L GR +L
Sbjct: 91 ATDPGIKQALKDGFPGGLANLDHYGRKIL 119
Score = 35.5 bits (78), Expect = 0.19
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 526 WDPSAVPIEDVVRCALFMDEIAVMQPKLQILGVTIIVDLDGVEHQTREAFDPDSLR 693
WD S + D++R L E + P+LQ+ G +I+D + P LR
Sbjct: 126 WDQSRYTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLR 181
>BC101376-1|AAI01377.1| 327|Homo sapiens retinaldehyde binding
protein 1-like 2 protein.
Length = 327
Score = 47.6 bits (108), Expect = 4e-05
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Frame = +2
Query: 257 IEELRRMVRERGECIPRRVDDAYCLRFLRCRRFIPALAHKLMVRYEDFRQNNAYLYN--- 427
I+E+R MV R + R DDA+ LRFLR R+F A +L+ +Y ++RQ N ++
Sbjct: 31 IQEVRDMVITRPDIGFLRTDDAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFK 90
Query: 428 -CDPFGLQRVKNVYGATLPESPENGRIVL 511
DP Q +K+ + L GR +L
Sbjct: 91 ATDPGIKQALKDGFPGGLANLDHYGRKIL 119
Score = 35.5 bits (78), Expect = 0.19
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 526 WDPSAVPIEDVVRCALFMDEIAVMQPKLQILGVTIIVDLDGVEHQTREAFDPDSLR 693
WD S + D++R L E + P+LQ+ G +I+D + P LR
Sbjct: 126 WDQSRYTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLR 181
>AL591428-2|CAI12306.1| 327|Homo sapiens protein ( to hypothetical
proteins from ).).
Length = 327
Score = 47.6 bits (108), Expect = 4e-05
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Frame = +2
Query: 257 IEELRRMVRERGECIPRRVDDAYCLRFLRCRRFIPALAHKLMVRYEDFRQNNAYLYN--- 427
I+E+R MV R + R DDA+ LRFLR R+F A +L+ +Y ++RQ N ++
Sbjct: 31 IQEVRDMVITRPDIGFLRTDDAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFK 90
Query: 428 -CDPFGLQRVKNVYGATLPESPENGRIVL 511
DP Q +K+ + L GR +L
Sbjct: 91 ATDPGIKQALKDGFPGGLANLDHYGRKIL 119
Score = 35.5 bits (78), Expect = 0.19
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 526 WDPSAVPIEDVVRCALFMDEIAVMQPKLQILGVTIIVDLDGVEHQTREAFDPDSLR 693
WD S + D++R L E + P+LQ+ G +I+D + P LR
Sbjct: 126 WDQSRYTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLR 181
>AK091641-1|BAC03711.1| 167|Homo sapiens protein ( Homo sapiens
cDNA FLJ34322 fis, clone FEBRA2008861, weakly similar to
CELLULAR RETINALDEHYDE-BINDING PROTEIN. ).
Length = 167
Score = 46.4 bits (105), Expect = 1e-04
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Frame = +2
Query: 257 IEELRRMVRERGECIPRRVDDAYCLRFLRCRRFIPALAHKLMVRYEDFRQNNAYL---YN 427
I+++R M+ R + R DDA+ LRFLR R+F A A +L+ +Y +RQ N + +
Sbjct: 53 IQQVRDMIITRPDIGFLRTDDAFILRFLRARKFHQADAFRLLAQYFQYRQLNLDMFKNFK 112
Query: 428 CDPFGLQR-VKNVYGATLPESPENGRIVL*GSDAGIPVLCRSKTWFVAPCSWMK 586
D G++R + + + L GR +L A S+T FV C K
Sbjct: 113 ADDPGIKRALIDGFPGVLENRDHYGRKILLLFAANWDQRTPSQTSFVPSCCHWK 166
>BC042617-1|AAH42617.1| 354|Homo sapiens retinaldehyde binding
protein 1-like 1 protein.
Length = 354
Score = 44.0 bits (99), Expect = 5e-04
Identities = 22/56 (39%), Positives = 35/56 (62%)
Frame = +2
Query: 257 IEELRRMVRERGECIPRRVDDAYCLRFLRCRRFIPALAHKLMVRYEDFRQNNAYLY 424
I+++R M+ R + R DDA+ LRFLR R+F A A +L+ +Y +RQ N ++
Sbjct: 53 IQQVRDMIITRPDIGFLRTDDAFILRFLRARKFHQADAFRLLAQYFQYRQLNLDMF 108
Score = 34.7 bits (76), Expect = 0.33
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 526 WDPSAVPIEDVVRCALFMDEIAVMQPKLQILGVTIIVDLDGVEHQTREAFDPDSLR 693
WD S D++R L E+ + P+LQI G +I+D + P L+
Sbjct: 148 WDQSRNSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKLTPSILK 203
>AY094971-1|AAM15733.1| 354|Homo sapiens cellular
retinaldehyde-binding protein-like protein protein.
Length = 354
Score = 44.0 bits (99), Expect = 5e-04
Identities = 22/56 (39%), Positives = 35/56 (62%)
Frame = +2
Query: 257 IEELRRMVRERGECIPRRVDDAYCLRFLRCRRFIPALAHKLMVRYEDFRQNNAYLY 424
I+++R M+ R + R DDA+ LRFLR R+F A A +L+ +Y +RQ N ++
Sbjct: 53 IQQVRDMIITRPDIGFLRTDDAFILRFLRARKFHQADAFRLLAQYFQYRQLNLDMF 108
Score = 34.7 bits (76), Expect = 0.33
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 526 WDPSAVPIEDVVRCALFMDEIAVMQPKLQILGVTIIVDLDGVEHQTREAFDPDSLR 693
WD S D++R L E+ + P+LQI G +I+D + P L+
Sbjct: 148 WDQSRNSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKLTPSILK 203
>Z97053-6|CAI19686.1| 342|Homo sapiens chromosome 20 open reading
frame 121 protein.
Length = 342
Score = 41.5 bits (93), Expect = 0.003
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Frame = +2
Query: 257 IEELRRMVRERGECIPRRVDDAYCLRFLRCRRFIPALAHKLMVRYEDFRQNNAYLY-NCD 433
++ LR MVR+ + +DDA+ LRFLR R+F A +L+V Y R++ ++ N
Sbjct: 58 VQALRDMVRKEYPNLSTSLDDAFLLRFLRARKFDYDRALQLLVNYHSCRRSWPEVFNNLK 117
Query: 434 PFGLQRV-KNVYGATLPES-PENGRIVL*GSDAGIP 535
P L+ V + + LP + P +V D IP
Sbjct: 118 PSALKDVLASGFLTVLPHTDPRGCHVVCIRPDRWIP 153
>Z97053-5|CAI19685.1| 279|Homo sapiens chromosome 20 open reading
frame 121 protein.
Length = 279
Score = 41.5 bits (93), Expect = 0.003
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Frame = +2
Query: 257 IEELRRMVRERGECIPRRVDDAYCLRFLRCRRFIPALAHKLMVRYEDFRQNNAYLY-NCD 433
++ LR MVR+ + +DDA+ LRFLR R+F A +L+V Y R++ ++ N
Sbjct: 58 VQALRDMVRKEYPNLSTSLDDAFLLRFLRARKFDYDRALQLLVNYHSCRRSWPEVFNNLK 117
Query: 434 PFGLQRV-KNVYGATLPES-PENGRIVL*GSDAGIP 535
P L+ V + + LP + P +V D IP
Sbjct: 118 PSALKDVLASGFLTVLPHTDPRGCHVVCIRPDRWIP 153
>BC003071-1|AAH03071.2| 342|Homo sapiens chromosome 20 open reading
frame 121 protein.
Length = 342
Score = 41.5 bits (93), Expect = 0.003
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Frame = +2
Query: 257 IEELRRMVRERGECIPRRVDDAYCLRFLRCRRFIPALAHKLMVRYEDFRQNNAYLY-NCD 433
++ LR MVR+ + +DDA+ LRFLR R+F A +L+V Y R++ ++ N
Sbjct: 58 VQALRDMVRKEYPNLSTSLDDAFLLRFLRARKFDYDRALQLLVNYHSCRRSWPEVFNNLK 117
Query: 434 PFGLQRV-KNVYGATLPES-PENGRIVL*GSDAGIP 535
P L+ V + + LP + P +V D IP
Sbjct: 118 PSALKDVLASGFLTVLPHTDPRGCHVVCIRPDRWIP 153
>AL132772-9|CAI18861.1| 342|Homo sapiens chromosome 20 open reading
frame 121 protein.
Length = 342
Score = 41.5 bits (93), Expect = 0.003
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Frame = +2
Query: 257 IEELRRMVRERGECIPRRVDDAYCLRFLRCRRFIPALAHKLMVRYEDFRQNNAYLY-NCD 433
++ LR MVR+ + +DDA+ LRFLR R+F A +L+V Y R++ ++ N
Sbjct: 58 VQALRDMVRKEYPNLSTSLDDAFLLRFLRARKFDYDRALQLLVNYHSCRRSWPEVFNNLK 117
Query: 434 PFGLQRV-KNVYGATLPES-PENGRIVL*GSDAGIP 535
P L+ V + + LP + P +V D IP
Sbjct: 118 PSALKDVLASGFLTVLPHTDPRGCHVVCIRPDRWIP 153
>AL132772-8|CAI18860.1| 279|Homo sapiens chromosome 20 open reading
frame 121 protein.
Length = 279
Score = 41.5 bits (93), Expect = 0.003
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Frame = +2
Query: 257 IEELRRMVRERGECIPRRVDDAYCLRFLRCRRFIPALAHKLMVRYEDFRQNNAYLY-NCD 433
++ LR MVR+ + +DDA+ LRFLR R+F A +L+V Y R++ ++ N
Sbjct: 58 VQALRDMVRKEYPNLSTSLDDAFLLRFLRARKFDYDRALQLLVNYHSCRRSWPEVFNNLK 117
Query: 434 PFGLQRV-KNVYGATLPES-PENGRIVL*GSDAGIP 535
P L+ V + + LP + P +V D IP
Sbjct: 118 PSALKDVLASGFLTVLPHTDPRGCHVVCIRPDRWIP 153
>Z97053-4|CAO03543.1| 154|Homo sapiens chromosome 20 open reading
frame 121 protein.
Length = 154
Score = 40.7 bits (91), Expect = 0.005
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +2
Query: 257 IEELRRMVRERGECIPRRVDDAYCLRFLRCRRFIPALAHKLMVRYEDFRQNNAYLYN 427
++ LR MVR+ + +DDA+ LRFLR R+F A +L+V Y R++ ++N
Sbjct: 58 VQALRDMVRKEYPNLSTSLDDAFLLRFLRARKFDYDRALQLLVNYHSCRRSWPEVFN 114
>AL132772-7|CAO03334.1| 154|Homo sapiens chromosome 20 open reading
frame 121 protein.
Length = 154
Score = 40.7 bits (91), Expect = 0.005
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +2
Query: 257 IEELRRMVRERGECIPRRVDDAYCLRFLRCRRFIPALAHKLMVRYEDFRQNNAYLYN 427
++ LR MVR+ + +DDA+ LRFLR R+F A +L+V Y R++ ++N
Sbjct: 58 VQALRDMVRKEYPNLSTSLDDAFLLRFLRARKFDYDRALQLLVNYHSCRRSWPEVFN 114
>U21938-1|AAA64309.1| 278|Homo sapiens alpha-tocopherol transfer
protein protein.
Length = 278
Score = 35.5 bits (78), Expect = 0.19
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 514 RFGRWDPSAVPIEDVVRCALFMDEIAVMQPKLQILGVTIIVDLDG 648
R WDP DV R +L E+ V + + Q G+ I DL+G
Sbjct: 118 RIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEG 162
>D49488-1|BAA08449.1| 278|Homo sapiens alpha-tocopherol transfer
protein protein.
Length = 278
Score = 35.5 bits (78), Expect = 0.19
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 514 RFGRWDPSAVPIEDVVRCALFMDEIAVMQPKLQILGVTIIVDLDG 648
R WDP DV R +L E+ V + + Q G+ I DL+G
Sbjct: 118 RIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEG 162
>BC058000-1|AAH58000.1| 278|Homo sapiens tocopherol (alpha)
transfer protein protein.
Length = 278
Score = 35.5 bits (78), Expect = 0.19
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 514 RFGRWDPSAVPIEDVVRCALFMDEIAVMQPKLQILGVTIIVDLDG 648
R WDP DV R +L E+ V + + Q G+ I DL+G
Sbjct: 118 RIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEG 162
>L34219-1|AAA65123.1| 317|Homo sapiens retinaldehyde-binding
protein protein.
Length = 317
Score = 31.9 bits (69), Expect = 2.3
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +2
Query: 260 EELRRMVRERGECIPRRVDDAYCLRFLRCRRFIPALAHKLMVRYEDFRQNNAYLY-NCDP 436
EEL V ER + D + LRF+R R+F A++L+ Y +FR L+ + P
Sbjct: 78 EELAVAVAERVQ----EKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSP 133
Query: 437 FGLQ-RVKNVYGATLPESPENGRIVL 511
++ ++ Y L + GR+V+
Sbjct: 134 EAVRCTIEAGYPGVLSSRDKYGRVVM 159
>J04213-1|AAA60251.1| 317|Homo sapiens RLBP1 protein.
Length = 317
Score = 31.9 bits (69), Expect = 2.3
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +2
Query: 260 EELRRMVRERGECIPRRVDDAYCLRFLRCRRFIPALAHKLMVRYEDFRQNNAYLY-NCDP 436
EEL V ER + D + LRF+R R+F A++L+ Y +FR L+ + P
Sbjct: 78 EELAVAVAERVQ----EKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSP 133
Query: 437 FGLQ-RVKNVYGATLPESPENGRIVL 511
++ ++ Y L + GR+V+
Sbjct: 134 EAVRCTIEAGYPGVLSSRDKYGRVVM 159
>BC004199-1|AAH04199.1| 317|Homo sapiens retinaldehyde binding
protein 1 protein.
Length = 317
Score = 31.9 bits (69), Expect = 2.3
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +2
Query: 260 EELRRMVRERGECIPRRVDDAYCLRFLRCRRFIPALAHKLMVRYEDFRQNNAYLY-NCDP 436
EEL V ER + D + LRF+R R+F A++L+ Y +FR L+ + P
Sbjct: 78 EELAVAVAERVQ----EKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSP 133
Query: 437 FGLQ-RVKNVYGATLPESPENGRIVL 511
++ ++ Y L + GR+V+
Sbjct: 134 EAVRCTIEAGYPGVLSSRDKYGRVVM 159
>BC067529-1|AAH67529.1| 563|Homo sapiens hypothetical protein
FLJ12684 protein.
Length = 563
Score = 31.1 bits (67), Expect = 4.0
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 564 LRPVHG*-NCCDAAKTTDPGRDHHRRPRW 647
L HG C DA+ T D G D HR P W
Sbjct: 253 LTEAHGKWRCADASITNDKGHDGHRTPTW 281
>BC067528-1|AAH67528.1| 563|Homo sapiens hypothetical protein
FLJ12684 protein.
Length = 563
Score = 31.1 bits (67), Expect = 4.0
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 564 LRPVHG*-NCCDAAKTTDPGRDHHRRPRW 647
L HG C DA+ T D G D HR P W
Sbjct: 253 LTEAHGKWRCADASITNDKGHDGHRTPTW 281
>BC067526-1|AAH67526.1| 563|Homo sapiens hypothetical protein
FLJ12684 protein.
Length = 563
Score = 31.1 bits (67), Expect = 4.0
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 564 LRPVHG*-NCCDAAKTTDPGRDHHRRPRW 647
L HG C DA+ T D G D HR P W
Sbjct: 253 LTEAHGKWRCADASITNDKGHDGHRTPTW 281
>AY189288-1|AAO86732.1| 563|Homo sapiens LP9056 protein protein.
Length = 563
Score = 31.1 bits (67), Expect = 4.0
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 564 LRPVHG*-NCCDAAKTTDPGRDHHRRPRW 647
L HG C DA+ T D G D HR P W
Sbjct: 253 LTEAHGKWRCADASITNDKGHDGHRTPTW 281
>AK022746-1|BAB14220.1| 563|Homo sapiens protein ( Homo sapiens
cDNA FLJ12684 fis, clone NT2RM4002460, weakly similar to
ENV POLYPROTEIN. ).
Length = 563
Score = 31.1 bits (67), Expect = 4.0
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 564 LRPVHG*-NCCDAAKTTDPGRDHHRRPRW 647
L HG C DA+ T D G D HR P W
Sbjct: 253 LTEAHGKWRCADASITNDKGHDGHRTPTW 281
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,484,429
Number of Sequences: 237096
Number of extensions: 2117848
Number of successful extensions: 8020
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 7782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8020
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -