Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20134
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U80027-11|AAC48117.2|  106|Caenorhabditis elegans Hypothetical p...    27   9.9  
AL110501-9|CAB54507.2|  802|Caenorhabditis elegans Hypothetical ...    27   9.9  
AL033514-40|CAD36501.1|  802|Caenorhabditis elegans Hypothetical...    27   9.9  
AJ319870-1|CAC67459.1|  802|Caenorhabditis elegans ZYG-8 protein...    27   9.9  

>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical
           protein R03G5.3 protein.
          Length = 1311

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 113 LYSLKWITYNVSILIVLFMYCFMQFTFTEFAA 18
           +Y L WIT  VS   +LF+Y +++  F  + A
Sbjct: 532 IYLLNWITLAVSTSTMLFLYIYLRKNFQGYPA 563


>U80027-11|AAC48117.2|  106|Caenorhabditis elegans Hypothetical
           protein T28A11.6 protein.
          Length = 106

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 245 SVREFVTILLGVLFKVRVFVSAQFGLEGDVNE-RHGRFSTIT 123
           ++ +  T+L+G+LF     V    G+ G  NE +HG    IT
Sbjct: 30  TIAKIATVLIGILFVASPIVFGVSGVVGKNNEHKHGTHINIT 71


>AL110501-9|CAB54507.2|  802|Caenorhabditis elegans Hypothetical
           protein Y79H2A.11 protein.
          Length = 802

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 559 VRCALFMDEIAVMQPKLQILGVTIIVDLDGVEHQTREAFDPD 684
           ++ AL  D +  MQP ++ L  T+I D   + H  R  F  D
Sbjct: 226 IQYALQSDRVKSMQPLMEDLMKTVICDSTALPHGIRHIFTID 267


>AL033514-40|CAD36501.1|  802|Caenorhabditis elegans Hypothetical
           protein Y79H2A.11 protein.
          Length = 802

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 559 VRCALFMDEIAVMQPKLQILGVTIIVDLDGVEHQTREAFDPD 684
           ++ AL  D +  MQP ++ L  T+I D   + H  R  F  D
Sbjct: 226 IQYALQSDRVKSMQPLMEDLMKTVICDSTALPHGIRHIFTID 267


>AJ319870-1|CAC67459.1|  802|Caenorhabditis elegans ZYG-8 protein
           protein.
          Length = 802

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 559 VRCALFMDEIAVMQPKLQILGVTIIVDLDGVEHQTREAFDPD 684
           ++ AL  D +  MQP ++ L  T+I D   + H  R  F  D
Sbjct: 226 IQYALQSDRVKSMQPLMEDLMKTVICDSTALPHGIRHIFTID 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,231,534
Number of Sequences: 27780
Number of extensions: 345855
Number of successful extensions: 888
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)