Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20134
(705 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 27 0.23
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 23 2.1
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 23 2.1
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 23 2.1
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 23 2.1
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 2.8
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 23 2.8
AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cycl... 22 6.5
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 22 6.5
AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cycl... 22 6.5
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 22 6.5
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 21 8.6
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 26.6 bits (56), Expect = 0.23
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 493 KWKNSFMRFGRWDPSAVPIEDVVRCALFMDEIAVMQPKLQIL 618
KWKN +++ W+ PI +++ C+ ++E + +LQ+L
Sbjct: 264 KWKNWDLKYNTWE----PISNLINCSDILEEFE--RNRLQLL 299
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 2.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 6 RERTRREFSESKLHKTIHK*ND*YRY 83
R R R+E +SK HK I ++ Y Y
Sbjct: 66 RSRDRKEREKSKEHKIISSLSNNYNY 91
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 2.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 6 RERTRREFSESKLHKTIHK*ND*YRY 83
R R R+E +SK HK I ++ Y Y
Sbjct: 66 RSRDRKEREKSKEHKIISSLSNNYNY 91
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 2.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 6 RERTRREFSESKLHKTIHK*ND*YRY 83
R R R+E +SK HK I ++ Y Y
Sbjct: 66 RSRDRKEREKSKEHKIISSLSNNYNY 91
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 23.4 bits (48), Expect = 2.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 504 ILPFSGLSGKVAP*TFLTRCS 442
++P G+ G+ P FLT CS
Sbjct: 178 LMPVMGVWGRFVPEGFLTSCS 198
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.0 bits (47), Expect = 2.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 379 QFVS*SRNKPPTSKKSETVCVVNAPRD 299
Q +S ++K KKS+T+ VNA D
Sbjct: 63 QPISKRKDKEHKKKKSKTILAVNAEAD 89
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 23.0 bits (47), Expect = 2.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 379 QFVS*SRNKPPTSKKSETVCVVNAPRD 299
Q +S ++K KKS+T+ VNA D
Sbjct: 63 QPISKRKDKEHKKKKSKTILAVNAEAD 89
>AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 21.8 bits (44), Expect = 6.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 546 RHSTGIPASEPHKTILPFSGLSG 478
RHS +PA + L FSG+ G
Sbjct: 397 RHSRPVPAKKYDCVTLLFSGIVG 419
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 21.8 bits (44), Expect = 6.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 273 AWSANEVNVSLGALTTHTVS 332
+WS +N +L AL T T+S
Sbjct: 464 SWSDESLNNALDALRTGTIS 483
>AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 21.8 bits (44), Expect = 6.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 546 RHSTGIPASEPHKTILPFSGLSG 478
RHS +PA + L FSG+ G
Sbjct: 397 RHSRPVPAKKYDCVTLLFSGIVG 419
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 21.8 bits (44), Expect = 6.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 607 LQILGVTIIVDLDGV 651
L+ LG+ ++VDL GV
Sbjct: 341 LRSLGIPVVVDLPGV 355
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.4 bits (43), Expect = 8.6
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = -2
Query: 653 STPSRSTMMVTPRICSFGCITAISSMNRAQRTTSSIGTALGSQRPN 516
S +++ MVT ++ + A + N ++S LG Q+P+
Sbjct: 1187 SQQAQTVRMVTAQLAGKPIVLASGNKNVGVGVSNSGSVVLGKQQPS 1232
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,413
Number of Sequences: 438
Number of extensions: 4627
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -