Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20132
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.8  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   4.8  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   4.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 133  AVKIKTRIAILSAPFC*PTQKTELCKMPKSATSFPLPNLTW 11
            +V++  +IA     F   T K ++ K+P  A   P P +TW
Sbjct: 1272 SVRVPAKIASFDDKFT-ATYKEDV-KLPCLAVGVPAPEVTW 1310



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 43  ATSFPLPNLTWPRA 2
           A  FP P +TW +A
Sbjct: 702 ADGFPKPQVTWKKA 715


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 587 SEKKPNTITVLASISSLACSAEVTSTEGGQSSSS 486
           SE    T+T  AS+ SL  +  +TS +  + S S
Sbjct: 405 SEYVDITVTTDASVPSLVSNVRITSVKSSELSIS 438


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 540 RTYRCQYCYCIWFLFG 587
           R  +C Y YC+W  FG
Sbjct: 67  RQLKC-YMYCLWEQFG 81


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 43 ATSFPLPNLTW 11
          AT FP P +TW
Sbjct: 46 ATGFPRPEITW 56


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 531 TG*RTYRCQYC 563
           TG + Y+C+YC
Sbjct: 115 TGEKPYQCEYC 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,560
Number of Sequences: 438
Number of extensions: 3209
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)