Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20131
         (822 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    29   0.034
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    26   0.42 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    24   1.3  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.1  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   6.8  
AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    21   8.9  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   8.9  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 29.5 bits (63), Expect = 0.034
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +3

Query: 249 GLESKAQLPTKRRRCSPFAASPSTSPGLK-----TSESKPSSFGESVSAPVKITPERMAQ 413
           G+  ++  P  +   +P ++S  TSP        TS   P+S   + SAP+ I  +R A 
Sbjct: 5   GIYEESPPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPLHIPAKRAAY 64

Query: 414 E 416
           +
Sbjct: 65  D 65


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +2

Query: 731 PARACRSVWTPTHAPGPRTQLS 796
           PA A RSV TPT  P P T  S
Sbjct: 211 PAAAPRSVATPTGIPTPSTSAS 232


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +1

Query: 340 QNRNHLHLENPLVHL*KLPQNAWHKRFMMRLNDCIDVDSCAWPTALLHH---AHH 495
           +  N LH  +  +H     QN  H+     +N C  +   +   A+LHH   +HH
Sbjct: 301 EQMNLLHSNDLNMHQQHHQQNMSHEELSAMVNRCHPLSLSSDHQAMLHHNPMSHH 355



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 367 SPNEDGFDSDVFNPGLVLGLAANG 296
           SP    F S + N G+  G+A NG
Sbjct: 43  SPQGASFGSSMLNSGMPGGMAMNG 66


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 548 NVPALVHYSLLNRFV*SVSECSMIRRWLYV 637
           NVP+L+ +   + +V +V   S+I RW ++
Sbjct: 437 NVPSLIIHVSTSAYVATVWINSVINRWKFI 466


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +1

Query: 574 TFKQVRMICERMLHDQEVALRAEYESVLSTKLAEQYEAFVRFNLDQV 714
           + K V  I +++L+        +   +    L   YE FVR+ L ++
Sbjct: 369 SLKDVIEIVDKLLNPDLGLSLLQVAQIFKNLLENHYEEFVRYELGEL 415


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 213 KENGVCYIKKKSGLESKAQLPTKRRRCSPFAASPSTS 323
           K NG C I KK+    KA    + R+C     S S S
Sbjct: 43  KNNGECVINKKNRTACKA---CRLRKCLLVGMSKSGS 76


>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 56  LKHRTLL*LENELYIFFVYYLYGA*Y 133
           +KH   L L N+  I F YY Y A Y
Sbjct: 46  VKHFHPLALSNKNAIDFNYYYYAATY 71


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund
          protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 2  GTRLLQPGKRRCKII 46
          G   +QPG  RCK++
Sbjct: 5  GLGAIQPGVNRCKLL 19


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,932
Number of Sequences: 336
Number of extensions: 4910
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22517873
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)