Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20131
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0674 + 19788198-19789817 30 1.9
05_01_0208 - 1501819-1502100,1506048-1506381,1507052-1507542 30 1.9
08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054 29 4.5
02_01_0076 + 540182-540583,541266-541475,541557-542018,542112-54... 29 4.5
01_06_0433 - 29311749-29311859,29311958-29312116,29312208-293123... 29 5.9
10_08_0548 - 18685114-18685230,18685615-18685724,18685779-186858... 28 7.8
03_02_0603 - 9786761-9786856,9787189-9787269,9787366-9787431,978... 28 7.8
03_02_0354 + 7760124-7761407,7762802-7762858 28 7.8
03_02_0127 + 5777564-5779879 28 7.8
>10_08_0674 + 19788198-19789817
Length = 539
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Frame = -2
Query: 455 LSTSMQSFNLIINLLCHAFWGNFHRCTNGFSK*R--------WFRF*CF*PRTCAWTCCK 300
L+++ + NL+I LL + HR T GFS R W R +CA C +
Sbjct: 236 LASAWANLNLVIFLLAFVYVSGVHRDTGGFSLPRKMFKDVDGWVRLVRLAAESCASVCLE 295
Query: 299 W 297
W
Sbjct: 296 W 296
>05_01_0208 - 1501819-1502100,1506048-1506381,1507052-1507542
Length = 368
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/90 (26%), Positives = 39/90 (43%)
Frame = +1
Query: 499 VDPRDCSPPHQSAHGPQRARTRALFTFKQVRMICERMLHDQEVALRAEYESVLSTKLAEQ 678
V P PH+ H P R ++VR +CER++ V L E E L +
Sbjct: 145 VRPPHLLSPHKWPHLPPDLRETTTEYSEEVRRLCERLMAVMAVGLGVE-EGRLQEAFGGR 203
Query: 679 YEAFVRFNLDQVQRRPPPSTCMSLGMDANT 768
A V ++ R P P ++LG+ +++
Sbjct: 204 EGAGVCVRVNYYPRCPQPD--LTLGLSSHS 231
>08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054
Length = 995
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -2
Query: 821 FRLMLLLGQIAGYEVLVHVLASIPSDMHVLGGGRRCT*SRLNLTKASYCSASLVL 657
FR+ L G I+ + L+H+ S S++ V+ C ++L S+CS +L
Sbjct: 502 FRISALQGSISKHACLIHLDLSGCSNIRVIQPEALCGLTKLQFLNLSWCSILQIL 556
>02_01_0076 +
540182-540583,541266-541475,541557-542018,542112-542222,
542309-542488,543083-543367,544581-544701,544802-544923
Length = 630
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = +1
Query: 466 PTALLHHAHHQVDP-----RDCSPPHQSAHGPQRARTR 564
P+ LLHH HH++ P R SP S H R R R
Sbjct: 4 PSLLLHHHHHRLSPRFAPSRSPSPRTLSLHPAPRLRLR 41
>01_06_0433 -
29311749-29311859,29311958-29312116,29312208-29312315,
29312449-29312531,29312617-29312786,29312833-29312903,
29313170-29313302,29313483-29313749,29313865-29313969,
29314053-29314144,29314263-29314363,29314426-29314552,
29315025-29315140,29315222-29315291,29315476-29315685
Length = 640
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -2
Query: 245 FLFNVAHAIFFLRPTKSSGLRICQRICFNY---EYKKMKNNIKP 123
F F ++ A+FFL+ K + R NY EYK M N + P
Sbjct: 250 FFFVISWAVFFLQFWKRKNSAVLARWGINYSFSEYKTMGNELDP 293
>10_08_0548 -
18685114-18685230,18685615-18685724,18685779-18685802,
18686135-18686213,18686346-18686588,18686659-18686823,
18686960-18687037,18687185-18687231,18687319-18687379,
18687667-18687723,18688164-18688247,18689292-18689357,
18689447-18689574,18689693-18689885
Length = 483
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/61 (31%), Positives = 23/61 (37%)
Frame = +1
Query: 475 LLHHAHHQVDPRDCSPPHQSAHGPQRARTRALFTFKQVRMICERMLHDQEVALRAEYESV 654
LLHH HH +PPH P ++ F R + A AEYE V
Sbjct: 18 LLHHNHHHHRGGGSAPPHPLLRPPPPPQSHP-FQLLTPRAAMASVAQPGVAAGSAEYEEV 76
Query: 655 L 657
L
Sbjct: 77 L 77
>03_02_0603 -
9786761-9786856,9787189-9787269,9787366-9787431,
9788056-9788610,9788693-9788857,9789110-9789217,
9789905-9790109,9790347-9790434,9791590-9792109
Length = 627
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +3
Query: 402 RMAQEIYDEIKRLHRRGQLRL 464
++AQEIY+EIK+ + G L+L
Sbjct: 332 KLAQEIYEEIKKKEQNGLLKL 352
>03_02_0354 + 7760124-7761407,7762802-7762858
Length = 446
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 342 ESKPSSFGESVSAPVKITPERMAQEI 419
E + GES APVK P R+ QE+
Sbjct: 19 EEESKGKGESTGAPVKYLPARLRQEV 44
>03_02_0127 + 5777564-5779879
Length = 771
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 240 KKSGLESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPER 404
K+S ++ LPTK S L +S++K + GE S+P +T R
Sbjct: 205 KQSSIKRPTSLPTKLNLIKQVPVPSQVSSHLLSSKAKRTVKGELTSSPATVTGVR 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,335,807
Number of Sequences: 37544
Number of extensions: 538733
Number of successful extensions: 1729
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1727
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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