Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20131
         (822 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)               77   2e-14
SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)                     31   0.85 
SB_21673| Best HMM Match : Troponin (HMM E-Value=0.34)                 28   8.0  

>SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1125

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 37/70 (52%), Positives = 51/70 (72%)
 Frame = +1

Query: 514 CSPPHQSAHGPQRARTRALFTFKQVRMICERMLHDQEVALRAEYESVLSTKLAEQYEAFV 693
           CSP    +  P R + + LFT KQV ++CERML +++  LR EY+ VL+ KL+EQY++FV
Sbjct: 247 CSP----SSSPTR-KEQPLFTLKQVSLLCERMLKERDTQLREEYDKVLAQKLSEQYDSFV 301

Query: 694 RFNLDQVQRR 723
           +FN DQVQRR
Sbjct: 302 KFNYDQVQRR 311



 Score = 31.9 bits (69), Expect = 0.65
 Identities = 24/70 (34%), Positives = 35/70 (50%)
 Frame = +3

Query: 252 LESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPERMAQEIYDEI 431
           L  + Q   KRRRC P A S S S    +S +  S F E      + + E+++  ++ E 
Sbjct: 170 LSPQHQPSPKRRRCIPMATSSSPS----SSSNTDSPFLEITP---RYSQEQLSTNLHMEW 222

Query: 432 KRLHRRGQLR 461
           KRL RR  L+
Sbjct: 223 KRLQRRKHLK 232


>SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)
          Length = 1681

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +2

Query: 470  RLCCIMLIIKWIRETVHRLINQLMAHNVPALVHYSLLNRFV*SV--SECSMIRRWLYVLS 643
            R CC+ + + W  E +  +  +L+  N PA    + +   +  V  S  SM+ R   +  
Sbjct: 1517 RSCCVDVYLPWPHEALVSIAEKLIDENDPAFAQVAAICSIMAHVHLSSRSMVERLYGIRG 1576

Query: 644  MSLYSAPSLLN 676
            + LYS  + L+
Sbjct: 1577 LKLYSPNTFLD 1587


>SB_21673| Best HMM Match : Troponin (HMM E-Value=0.34)
          Length = 337

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +1

Query: 583 QVRMICERMLHDQEVALRAEYESVLSTKLAEQYEAFVRFNLDQVQR 720
           QV  + +R+  ++E++   + E    T+ AE+Y+  ++ N  ++QR
Sbjct: 118 QVDCLKDRLSEEEEISCEVKVELKDKTREAEKYQRQIKDNESEIQR 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,615,645
Number of Sequences: 59808
Number of extensions: 599565
Number of successful extensions: 1728
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1723
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)