Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20131
         (822 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-7|AAK85463.1|  218|Caenorhabditis elegans Hypothetical ...    58   6e-09
U64851-1|AAC47990.2|  186|Caenorhabditis elegans Ground-like (gr...    31   0.75 
AF106575-2|AAQ62448.1|  506|Caenorhabditis elegans Hypothetical ...    31   1.00 
U39849-2|AAN63462.2|  370|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z78059-3|CAB01486.3|  345|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily a...    29   4.0  
U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore co...    29   5.3  
Z92838-5|CAB07404.2|  578|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z74045-3|CAA98551.1|  165|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z74039-7|CAA98506.1|  290|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical pr...    28   9.3  
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>AC006627-7|AAK85463.1|  218|Caenorhabditis elegans Hypothetical
           protein E01A2.6 protein.
          Length = 218

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 30/70 (42%), Positives = 44/70 (62%)
 Frame = +1

Query: 550 RARTRALFTFKQVRMICERMLHDQEVALRAEYESVLSTKLAEQYEAFVRFNLDQVQRRPP 729
           R+  +  FT   V+MICER+L  QE+ LR E+E VL+ KL EQ++ +V+F  +Q+     
Sbjct: 147 RSSAKREFTMANVQMICERLLKQQEIRLRNEFEMVLTKKLDEQHQQYVQFAAEQLN---- 202

Query: 730 PSTCMSLGMD 759
            S C+S G D
Sbjct: 203 -SKCVSTGDD 211


>U64851-1|AAC47990.2|  186|Caenorhabditis elegans Ground-like (grd
           related) protein12 protein.
          Length = 186

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 724 PPPSTCMSLGMDANTCTRTSYPAIC 798
           PPPSTC +  +   TCT  S PA C
Sbjct: 35  PPPSTCPTTCLPIMTCTPPSPPACC 59


>AF106575-2|AAQ62448.1|  506|Caenorhabditis elegans Hypothetical
           protein K04F1.14b protein.
          Length = 506

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 507 ERLFTASSISSWPTTCPHSCTIHF*TGSYDL*AN 608
           +   T+SSI +WPTTC   C   + T   DL  N
Sbjct: 34  DETITSSSIKNWPTTCESVCGNLYLTSETDLSEN 67


>U39849-2|AAN63462.2|  370|Caenorhabditis elegans Hypothetical
           protein C06A8.8a protein.
          Length = 370

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = +3

Query: 234 IKKKSGLESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPERMAQ 413
           ++K+  +    QLPT        A   S       S S  S    SVS P+    +R  +
Sbjct: 222 LRKREAVMKNPQLPTTSAITETIAIDTSCEKSAPVSSSSSSKQQSSVSPPLS---DRSKK 278

Query: 414 EIYDEIKRLHRRG 452
           +I DEI  +  +G
Sbjct: 279 QILDEILGIDEKG 291


>Z78059-3|CAB01486.3|  345|Caenorhabditis elegans Hypothetical
           protein C34B4.2a protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 288 RCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKIT 395
           RC P A+ P+    ++  E+K +S G S + P++ T
Sbjct: 224 RCPPQASIPAYYARVRMEETKAASSGNSTAGPIRAT 259


>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
           protein Y53F4B.9 protein.
          Length = 1168

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 649 SVLSTKLAEQYEAFVRFNLDQVQRRPPPSTCMSLGMDANTCTRTSYPA 792
           S L   L E ++ + R     + + PP S+   L +  N+CT T YP+
Sbjct: 702 SELQEDLLELHKPYERSRELTMAQNPPDSSLEKLEVPQNSCTTTIYPS 749


>AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 63 protein.
          Length = 604

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = +3

Query: 285 RRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPER 404
           RR SPF++S ST+P +K+   + S F ES+   V  +PER
Sbjct: 220 RRRSPFSSSKSTAP-IKSRHYR-SRFSESLEDNVFRSPER 257


>U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore complex
            protein protein10, isoform b protein.
          Length = 1189

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 328  PGLVLGLAANGEHLLLFVGNCALDSNP-DFFLM*H 227
            PG ++ LA   +H +  V +CA   NP D+FL  H
Sbjct: 901  PGELIKLACESQHSVEVVLDCAAGENPNDYFLQWH 935


>Z92838-5|CAB07404.2|  578|Caenorhabditis elegans Hypothetical
           protein T03D8.6 protein.
          Length = 578

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +3

Query: 351 PSSFGES---VSAPVKITPERMAQEIYDEIKRLHR 446
           PSSFG +   VSA  K+ PE    +IY++ K LH+
Sbjct: 285 PSSFGVTQLIVSAMSKLFPEGHKDDIYNDPKVLHK 319


>Z74045-3|CAA98551.1|  165|Caenorhabditis elegans Hypothetical
           protein T27F2.4 protein.
          Length = 165

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +3

Query: 297 PFAASPSTSPGLKTSESKPSSFGESVSAPVKITPERMAQEIYD-----EIKRLHRR 449
           PF +S S   G  T+ S   S  ES +AP KI   R  QEI D       K+ HRR
Sbjct: 48  PFESSASL--GTSTTSSSRCSSTESSAAPGKIRRGRPQQEIADGQDAHSQKKRHRR 101


>Z74039-7|CAA98506.1|  290|Caenorhabditis elegans Hypothetical
           protein K03B8.7 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 155 EYKKMKNNIKPHTGNTRKKYTIRFQVTVKSDVLN 54
           E ++MKN I   + N  +K  IRF   ++SD +N
Sbjct: 110 EVQRMKNEIMEISTNKTRKSEIRFSPPIESDRVN 143


>Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical protein
            F40F11.2b protein.
          Length = 1607

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = +3

Query: 246  SGLESKAQLPTKR----RRCSPFAASPSTSPGLKTSESKPSSFGESVSA--PVKITPER 404
            +G + K QL   +     R +PFA  PS+ P   ++ S   S   +VSA  P   TP R
Sbjct: 1370 AGKDKKGQLAKNKAAFCNRFNPFANVPSSKPSTSSAVSATPSTSSAVSAKLPTGKTPGR 1428


>Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical protein
            F40F11.2a protein.
          Length = 1593

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = +3

Query: 246  SGLESKAQLPTKR----RRCSPFAASPSTSPGLKTSESKPSSFGESVSA--PVKITPER 404
            +G + K QL   +     R +PFA  PS+ P   ++ S   S   +VSA  P   TP R
Sbjct: 1356 AGKDKKGQLAKNKAAFCNRFNPFANVPSSKPSTSSAVSATPSTSSAVSAKLPTGKTPGR 1414


>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical
           protein ZK593.5 protein.
          Length = 1326

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 273 PTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPER 404
           P ++    P  AS +T+P  K S SKP     + S P ++TP++
Sbjct: 175 PRRQSLAPPKKASTTTAPVSKPSLSKPRQ-SLAPSKPAEVTPQK 217


>Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical
           protein F09C8.2 protein.
          Length = 762

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 312 PSTSPGLKTSESKPSSFGESVSAPVKITPERMAQEIYDEIKRL 440
           P + P L TS  KPS   +  +AP+K  P    QE+  E ++L
Sbjct: 477 PVSVPELLTSTKKPSQPAKVPAAPIK-APRLSDQELESESQKL 518


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
           protein F35A5.1 protein.
          Length = 1274

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 234 IKKKSGLESKAQLPTKRRRCSPFAASPSTSPGLKTSES--KPSSFGESVSAPVKITPERM 407
           +KK S  E K  +  KR+   P + +PS+ P  K +    KP       + P++  P+  
Sbjct: 363 VKKPSAPEKKTPV-LKRKEPEPSSTTPSSDPSPKKAAPAVKPRDSSPKKATPLQADPK-- 419

Query: 408 AQEI 419
           AQE+
Sbjct: 420 AQEV 423


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,411,413
Number of Sequences: 27780
Number of extensions: 458195
Number of successful extensions: 1538
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1533
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)