Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20130
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   111   3e-26
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    67   1e-12
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    66   2e-12
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    59   3e-10
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    27   1.5  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        26   2.0  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   6.1  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    24   8.1  
SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyce...    24   8.1  
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    24   8.1  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  111 bits (268), Expect = 3e-26
 Identities = 53/84 (63%), Positives = 59/84 (70%)
 Frame = +3

Query: 3   NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
           N WAKGHYTEGAEL D+VLDVVR+EAE+CD LQGFQ                   KIREE
Sbjct: 99  NIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREE 158

Query: 183 YPDRIMNTYSVVPSPKVSDTVVEP 254
           YPDR+M T+SV P+PK SDTVVEP
Sbjct: 159 YPDRMMATFSVAPAPKSSDTVVEP 182



 Score = 71.3 bits (167), Expect = 5e-14
 Identities = 31/44 (70%), Positives = 37/44 (84%)
 Frame = +2

Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNH 388
           NATLS+HQLVEN+DET+CIDNEAL  I   TLK+ +P+Y DLNH
Sbjct: 184 NATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNH 227


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 66.9 bits (156), Expect = 1e-12
 Identities = 32/84 (38%), Positives = 48/84 (57%)
 Frame = +3

Query: 3   NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
           NN+A+GHYT G E++DSVL+ +R+ A++C  LQGF                    ++  E
Sbjct: 105 NNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNME 164

Query: 183 YPDRIMNTYSVVPSPKVSDTVVEP 254
           Y  +    +SV P+P+VS +VVEP
Sbjct: 165 YGKKSNLQFSVYPAPQVSTSVVEP 188



 Score = 52.4 bits (120), Expect = 3e-08
 Identities = 21/43 (48%), Positives = 30/43 (69%)
 Frame = +2

Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLN 385
           N+ L+ H  ++N+D T+ +DNEA YDIC R L +  PTY +LN
Sbjct: 190 NSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLN 232


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 66.5 bits (155), Expect = 2e-12
 Identities = 33/84 (39%), Positives = 46/84 (54%)
 Frame = +3

Query: 3   NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
           NN+A+GHYT G ELVD V D +R+ A++C  LQGF                    ++  E
Sbjct: 101 NNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAME 160

Query: 183 YPDRIMNTYSVVPSPKVSDTVVEP 254
           Y  +    +SV P+P+VS +VVEP
Sbjct: 161 YTKKSKLQFSVYPAPQVSTSVVEP 184



 Score = 45.6 bits (103), Expect = 3e-06
 Identities = 18/43 (41%), Positives = 28/43 (65%)
 Frame = +2

Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLN 385
           N+ L+ H  ++  D T+ +DNE+ YDIC R L +  P+Y +LN
Sbjct: 186 NSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLN 228


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 58.8 bits (136), Expect = 3e-10
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +3

Query: 3   NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
           NNWA G Y+    + + ++D++ +EA+  D L+GF                    ++ + 
Sbjct: 102 NNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDR 160

Query: 183 YPDRIMNTYSVVP-SPKVSDTVVEP 254
           YP +I+ TYSV P S  VSD VV+P
Sbjct: 161 YPKKIIQTYSVFPNSQSVSDVVVQP 185



 Score = 27.9 bits (59), Expect = 0.66
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLN 385
           N+ L++ +L  N D    +DN AL  I    L    PT+   N
Sbjct: 187 NSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQN 229


>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 237 DTVVEPTTPHFQFIN*LKTQTKPTVSTTRLSTISASAR*N 356
           D  V P+T   Q +N  +   +PT S + LS I   A  N
Sbjct: 250 DEFVSPSTDKAQLLNRFRESIRPTTSNSSLSGIIPGATHN 289


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 12  AKGHYTEGAELVDSVLDVVRKEAESCDCLQ 101
           A+GH   G ELV +  D +RK++E+   L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 320 EALYDICFRTLKLSTPTYGDLNHWCR 397
           +A Y +CF     +   Y DL + CR
Sbjct: 567 QAAYALCFPNTDYALTAYNDLQYICR 592


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 251  TDNATLSVHQLVENTDETYCI 313
            T N  L+V+ +V N DET+ I
Sbjct: 1418 TFNVCLAVNTIVNNVDETFSI 1438


>SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 214

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 292 HRRNLLYRQRGSLRYLLPHAKTIHTH 369
           H   LLY      +YLL H + +H H
Sbjct: 107 HPNLLLYLSSPERQYLLRHQQIVHRH 132


>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 263 TLSVHQLVENTDETYCIDNEALYD 334
           T S+ ++VEN   T+C  NE + +
Sbjct: 238 TSSIIEMVENNYRTWCSQNERMVE 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,653,448
Number of Sequences: 5004
Number of extensions: 29901
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)