Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20129
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 109 4e-25
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 109 4e-25
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 3.6
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 27 3.6
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 26 6.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.3
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 8.3
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 8.3
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 109 bits (262), Expect = 4e-25
Identities = 48/65 (73%), Positives = 56/65 (86%)
Frame = +2
Query: 59 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 238
M + E FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 239 VGIDI 253
V +DI
Sbjct: 61 VALDI 65
Score = 107 bits (258), Expect = 1e-24
Identities = 45/87 (51%), Positives = 67/87 (77%)
Frame = +1
Query: 256 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQL 435
NG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G+LG ++
Sbjct: 67 NGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEI 125
Query: 436 RTDFDSGKELLCTVLKSCGEECVIASK 516
F+ GK+L+ TV+ + GEE +A +
Sbjct: 126 EEGFEEGKDLIITVVSAMGEEIALACR 152
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 109 bits (262), Expect = 4e-25
Identities = 48/65 (73%), Positives = 56/65 (86%)
Frame = +2
Query: 59 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 238
M + E FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 239 VGIDI 253
V +DI
Sbjct: 61 VALDI 65
Score = 108 bits (260), Expect = 7e-25
Identities = 46/92 (50%), Positives = 68/92 (73%)
Frame = +1
Query: 256 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQL 435
NG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G+LG ++
Sbjct: 67 NGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEI 125
Query: 436 RTDFDSGKELLCTVLKSCGEECVIASKQTQLS 531
FD G++L+ TV+ + GEE +A + S
Sbjct: 126 EEGFDEGRDLIITVVSAMGEETALACRDAPSS 157
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 295 NMDVPHVKREDYQLTDISDDGYL 363
NM +P+++ E Q+ D + D YL
Sbjct: 968 NMSIPYIRGEYVQMIDANQDNYL 990
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 151 FRYAEGSSMQDC*NVHIQNRKARPR*SSLGWD 246
+ + E +Q C N+ +N +A R SS GWD
Sbjct: 41 YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 472 TVLKSCGEECVIASKQTQLSTNKPTQHL*G 561
TV K+ EECV+AS +T L T PT + G
Sbjct: 306 TVAKT--EECVLASIETFLDTGIPTNPVNG 333
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -2
Query: 506 MTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 393
+ S+P STV N+S P++ S + +P + S +L SS
Sbjct: 1254 LNSSTPITSSTVVNSSTPITSSTALNTSIPITSSSVLNSS 1293
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 506 MTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSSRRSPLSAI 369
+ S+P STV N+S P++ S + P + S +L SS S+I
Sbjct: 3138 LNSSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSSI 3185
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = +3
Query: 9 AVGHISFLTVVKFKTQQWVTSKTHTLRPETPGPQPPSPC 125
AVG + L + W+ K +T ET PQ C
Sbjct: 154 AVGFVDALFCTRIPASLWIKYKEYTTSAETTVPQECGLC 192
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 313 VKREDYQLTDISDDGYL 363
+KREDY+LT ++ GYL
Sbjct: 91 IKREDYELTLCANCGYL 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,910
Number of Sequences: 5004
Number of extensions: 65386
Number of successful extensions: 217
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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