Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20129
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                99   4e-21
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               30   2.2  
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)            24   2.7  
SB_3686| Best HMM Match : Myotub-related (HMM E-Value=2.8e-08)         29   3.8  
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   28   6.7  
SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         28   6.7  
SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)           28   6.7  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  28   6.7  
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.7  
SB_45329| Best HMM Match : Protamine_P2 (HMM E-Value=0.63)             28   8.8  
SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)           25   9.7  

>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 43/60 (71%), Positives = 51/60 (85%)
 Frame = +2

Query: 53  TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 232
           T   ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644



 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 28/62 (45%), Positives = 43/62 (69%)
 Frame = +1

Query: 331 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIA 510
           ++T+I +DGYL LM DNGD R D+K+ D D+  ++R  F++ +  + TVLK+ GEE V+ 
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702

Query: 511 SK 516
            K
Sbjct: 703 VK 704


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 530  ESC--VCFDAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPS 411
            +SC  +CF +   S P    + H+N+ P   S  NC P  PS
Sbjct: 1285 QSCPKICFTSCKPSCPVHCCSEHSNACPQECSTDNCKPSCPS 1326


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 66  TSKTHTLRPETPGPQPPSPCNVRPCVKTVSLC*RVVH-ARLLKCPH 200
           T+K HT +P T  P    P N+ P + + +L   ++H     + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 18  HISFLTVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRPC 140
           H   L   K KT +  T+K +T +P T  P+   P   +PC
Sbjct: 92  HTIKLYTTKPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132


>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +3

Query: 54  QQWVTSKTHTLRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKP 209
           +Q V S      P  P P PP+PC + PC +T     +VVH+  L    P P
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT-----QVVHSVQLHASPPGP 171


>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
          Length = 458

 Score = 24.2 bits (50), Expect(2) = 2.7
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +3

Query: 117 SPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISQW*KV*RY 278
           +PC ++ C + +S+    V   ++K P   P    TL   ++G  ++  K+ +Y
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIGHQARKLKIVKY 451



 Score = 23.8 bits (49), Expect(2) = 2.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 99  PGPQPPSPCNVRP 137
           PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374


>SB_3686| Best HMM Match : Myotub-related (HMM E-Value=2.8e-08)
          Length = 629

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +1

Query: 238 GWD*YLNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 417
           GWD + N   +  +C ST +  + HV   +Y+   +     L     N   +ED K+ + 
Sbjct: 204 GWDMFSNDLDFAKVCSSTQSWRISHV-NINYESVLMRSGEPLCGSMSNKRCKEDEKLVNS 262

Query: 418 DLGT 429
            LG+
Sbjct: 263 ALGS 266


>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = +1

Query: 256 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNG 384
           NG  Y   CP   N D    + EDY  +   D  YLT   D G
Sbjct: 400 NGHTYHMTCPGQTNFDPAKKRCEDYDCSG-RDVAYLTDQNDGG 441


>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/82 (23%), Positives = 33/82 (40%)
 Frame = +1

Query: 283 PSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKE 462
           P +  + V   +  +++  D   +      ADN + RE+    + +L ++  T    G  
Sbjct: 284 PESDGIRVDETENGEHEAVDELPEDKPDTEADNYEQREETPTKEDELKSECTTSDSEGTP 343

Query: 463 LLCTVLKSCGEECVIASKQTQL 528
              T  KS GEE V    +  L
Sbjct: 344 SAATYGKSDGEENVAQESEESL 365


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 491 PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVR 360
           P+  S V + +LP+   V  C+P SPS I RS    P     VR
Sbjct: 253 PRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISNVR 295


>SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = +1

Query: 298 MDVPHVKREDYQLTDISDDGYLT----LMADNGDLREDLKIPDGDLGTQLRTDFDSGKEL 465
           +D+P+ K + + L  ++DD  L+    +  D   L E L  PD  +    R   D G E 
Sbjct: 37  LDIPYEKYDKFDLESLTDDECLSEFRFIKNDLYRLNEALNFPD-QITCPNRLTVD-GMEA 94

Query: 466 LCTVLKSCGEECVIASKQTQLS 531
           LC  L+     C       Q+S
Sbjct: 95  LCMTLRRFAYPCRYEDLVPQIS 116


>SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -3

Query: 310 GVRPCCVWRDRYLHTFYH*DINPNQVNFSVAVLSGFGCGHFNNLAWTTLQHNETVFTQ 137
           G+R C    D  L  F + + +    + S A ++ +G GH N +    L H   + TQ
Sbjct: 243 GLRSCITHGDDLLSVFDNMESSSKVFDMSNAPVTRYGLGHVNQILEEELSHLRFLKTQ 300


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 155  RNRFYAGPNIAW--GRWLRPRSLRSQSV 78
            R  F+  PN+A   G+WL P+SLR+  V
Sbjct: 947  REGFFNNPNLAGCKGQWLGPKSLRASRV 974


>SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)
          Length = 872

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
 Frame = +1

Query: 274 DICPSTHNMDVPHVKREDYQLTDISDDGYLTLM----ADNGDLREDLKIPDGDLGTQLRT 441
           D+  S H +D+P+   E++    + +D  ++      +D   L E L+IPD    T  + 
Sbjct: 592 DLNTSNH-IDLPYNSYENFDFDILEEDECMSEFRFHKSDIPLLAEMLQIPDRL--TLYQR 648

Query: 442 DFDSGKELLCTVLKSCGEECVIASKQTQLSTNKP 543
              SG E LC VLK     C  A    + S   P
Sbjct: 649 SVCSGLEALCIVLKRLAYPCRYADMVAKFSRPVP 682


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 33  TVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRP 137
           +VV     + VT K  T +P TP P  P P   RP
Sbjct: 758 SVVAMPAARPVTPKPVTPKPVTPKPVTPKPVTTRP 792


>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 143 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVG 244
           + G +M +G+PCKI   +   K G HG   +H+ G
Sbjct: 17  RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG 50


>SB_45329| Best HMM Match : Protamine_P2 (HMM E-Value=0.63)
          Length = 474

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 167 GRPCKIVEMSTSKTGKHGHAKVHLVGIDISMVKSMKISVPPHTTWTYPT 313
           G+  +   M  S +   G+ K  LV   IS ++++ +++PPHT    PT
Sbjct: 421 GQKTRPGRMKKSTSLDSGNVK-RLVDESISAIETVNVALPPHTLKPQPT 468


>SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)
          Length = 605

 Score = 25.0 bits (52), Expect(2) = 9.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 72  KTHTLRPETPGPQPPSP 122
           K H  +P  P P PPSP
Sbjct: 344 KEHPDKPRDPAPVPPSP 360



 Score = 21.0 bits (42), Expect(2) = 9.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 96  TPGPQPPSPCNVRPCVKT 149
           T GP PP+  N +P   T
Sbjct: 377 TFGPPPPAASNAKPAQYT 394


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,451,741
Number of Sequences: 59808
Number of extensions: 545555
Number of successful extensions: 1498
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)