Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20128
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   100   4e-22
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma...    26   4.6  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   8.0  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 99.5 bits (237), Expect = 4e-22
 Identities = 54/147 (36%), Positives = 71/147 (48%)
 Frame = +3

Query: 255 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFFTT 434
           +A+PR+NN  F              + E G G G TVYPPLSS  +H G ++DLAI    
Sbjct: 99  VAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQ 158

Query: 435 FSXXXXXXXXXXXXXXXXXXTIK**SFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 614
            +                       S  Q+PLF  A+ IT+          AG + +L +
Sbjct: 159 LTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFS 218

Query: 615 DRNLNTSIFDPAGGGDPILYHHLFDFW 695
           DRNLNTS + P GGGDP+LY HLF F+
Sbjct: 219 DRNLNTSFYAPEGGGDPVLYQHLFWFF 245



 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
 Frame = +1

Query: 10  TNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXX 183
           TN KDI  LY                    EL  PGS  L G+ Q+YN  ++AH      
Sbjct: 15  TNAKDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIF 74

Query: 184 XXXXXXXXXXXXN*LVPLILGAPE 255
                       N LVPL++GAP+
Sbjct: 75  FFIIPALFGAFGNYLVPLMIGAPD 98


>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 436 NVVKKIARSTDLPLCAILDESGG*TVHPVPAPFST 332
           N+V   + +TDL +   +  SGG T+H  P  FST
Sbjct: 3   NIVVLGSMNTDLVMRTKICPSGGETIHGEPDGFST 37


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 290 TPTPLPYIINFKKNCRKWCRNRMNS 364
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,021
Number of Sequences: 5004
Number of extensions: 38077
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)