Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20128
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526...    28   6.3  
05_03_0430 - 13945146-13945354,13945550-13946135,13946396-139464...    28   8.3  

>04_03_0941 -
           20950190-20951088,20952436-20952478,20952580-20952606,
           20953189-20953301,20953872-20954715,20955740-20955790,
           20956026-20956126,20956205-20956244,20956360-20957124
          Length = 960

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 682 KW*YKIGSPPPAGSKMDVFKFRSVNNIVIAPAKTGSDNNNKNAV 551
           K+ Y+IG     G + D    +S +N V  PA    DNN + A+
Sbjct: 305 KYCYRIGLVKVQGLRCDARNLKSPHNAVTDPAIEDLDNNLQQAI 348


>05_03_0430 -
           13945146-13945354,13945550-13946135,13946396-13946477,
           13946584-13946942
          Length = 411

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 436 NVVKKIARSTDLPLCAILDESGG*TVHPVPAPFSTILLEINNI 308
           N+ ++IAR    P+CA      G T+H VP P     +E+ ++
Sbjct: 249 NITQEIARGVAHPICA------GQTIHGVPLPVGHSRVEVEDV 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,943,293
Number of Sequences: 37544
Number of extensions: 250442
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)