Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20127
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    31   0.13 
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    26   6.3  
SPBC21.04 |med8|sep15|mediator complex subunit Med8|Schizosaccha...    25   8.3  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    25   8.3  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   8.3  

>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 87  IVAAHEVGHLLGAVHD 134
           +V AHE+GH+LG +HD
Sbjct: 225 LVVAHEIGHILGLIHD 240


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 290 PCPHLKSGENSA--TARRPSETLLSVSQIRHDEAVFPSALL 174
           PCP+++        TA+  SET +  S I   +   P+ALL
Sbjct: 346 PCPNIRIAMERILRTAQEQSETWIGSSTIHLGDTAVPNALL 386


>SPBC21.04 |med8|sep15|mediator complex subunit
           Med8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 221 VSQIRHDEAVF-PSALLGSWTTEIRRRRTAVMDRS*QMSNFVSSHDDTRKTTSVF 60
           V  + H  A+   S  L  W T I +    ++ +   +SN +++H  T +TTS++
Sbjct: 24  VQSLTHFLAILHQSESLSPWPT-IHKNFNILLSQIHSLSNNLAAHSHTLQTTSIY 77


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -1

Query: 567 RIIRNDILVFSYTLAVDAVLPSPHGEP--SAAGRYATQYPLPASKQ 436
           RI   +++ FS+  A+D VLP   G    SA G     + L A +Q
Sbjct: 195 RIADPEVMSFSHGEAIDVVLPMQSGSTVISAGGPSIKVWDLVAGRQ 240


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 212 FETH*EGFQMVAVQLQSFHHFLNGDTATCLYNSPHEDDSLPRVL 343
           F TH  G+   ++     HH   GDT T     P E D+  R L
Sbjct: 448 FYTH--GWTKSSLSTGLLHHHRFGDTVTWYVLPPDESDAFERYL 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,611
Number of Sequences: 5004
Number of extensions: 64239
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)