Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20127
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820... 30 2.2
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 30 2.2
08_02_1154 - 24727668-24728275,24728503-24728844,24730216-24731119 29 2.8
02_05_0534 + 29819323-29819900,29820122-29820202,29821007-298210... 29 2.8
10_02_0063 - 4849637-4850640,4854341-4854596,4854666-4855340 29 5.0
05_05_0105 + 22429087-22429250,22429507-22429672,22429777-224299... 28 6.6
03_05_1094 - 30348366-30348467,30348571-30348753,30348833-303489... 28 6.6
10_08_0749 - 20282982-20283632,20284081-20284141,20284828-202848... 28 8.7
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96... 28 8.7
01_01_0224 - 1905978-1907084,1907489-1908070,1908653-1908667 28 8.7
>02_05_0300 +
27681204-27681656,27681745-27681840,27681933-27682022,
27682126-27682227,27682310-27682456,27683608-27683748,
27683749-27683808,27685133-27685230,27685308-27685410,
27685954-27686037
Length = 457
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 323 HLHAESCIGKSPCPHLKSGENSATARRPSET 231
H A C + PCP+L S ATA+RPS++
Sbjct: 36 HWRAGRC-NRFPCPYLHSELPEATAKRPSQS 65
>01_06_0293 -
28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 516 AVLPSPHGEPSAAGRYATQYPLPAS 442
A LPSPH EP +A + P+PAS
Sbjct: 26 ASLPSPHSEPPSASAASPLSPVPAS 50
>08_02_1154 - 24727668-24728275,24728503-24728844,24730216-24731119
Length = 617
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/79 (18%), Positives = 34/79 (43%)
Frame = +2
Query: 260 SFHHFLNGDTATCLYNSPHEDDSLPRVLPGRLLTLDAQCRKDRGTSACFKDERVCAQLFC 439
++ +F+N + +++S + +LP +L + + C ++ C C
Sbjct: 217 NYTNFINSNVDLIIFDSDRDPQALPALLEWVISNSTSYCPRNSSAPECRSAHSSCQDTDA 276
Query: 440 FDAGSGYCVAYRPAAEGSP 496
+ A +GY Y +G+P
Sbjct: 277 W-ANNGYRCKYSYGYQGNP 294
>02_05_0534 +
29819323-29819900,29820122-29820202,29821007-29821027,
29821310-29821366,29822028-29822147,29822278-29822494
Length = 357
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 187 HRHFSAPGPPRYEGGGLPSWTAP 119
HRHFSAP P +GGG P+ +P
Sbjct: 33 HRHFSAPSQP--DGGGGPAPVSP 53
>10_02_0063 - 4849637-4850640,4854341-4854596,4854666-4855340
Length = 644
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 155 IRRRRTAVMDRS*QMSNFVSSHDDTRKTTSVFD 57
I R++ D + + NF+ +H + RK T +FD
Sbjct: 559 ISRKKATYSDNNSLVRNFLDAHKEKRKATELFD 591
>05_05_0105 +
22429087-22429250,22429507-22429672,22429777-22429977,
22430079-22430250,22430342-22430547,22430634-22430901,
22431285-22431517,22431610-22431656,22431768-22431789,
22431868-22431936,22432015-22432053,22432081-22432164
Length = 556
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 525 AVDAVLPSPHGEPSAAGRYATQYPLPASKQNS*AHTRSSLKHALVPLS 382
A+ L H + SA+GR + + LP+ T SSL+ AL P+S
Sbjct: 371 AIKTPLSMSHKKQSASGRVSGRVVLPSLTPCKEDKTGSSLRKALSPIS 418
>03_05_1094 -
30348366-30348467,30348571-30348753,30348833-30348934,
30349617-30349967,30350049-30350276,30350353-30350509,
30351189-30351370,30351443-30351866,30351949-30352892,
30353509-30353773,30354558-30355120
Length = 1166
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = +3
Query: 435 SVSTRVAGTAWRT----DPPPRARHAGTEVLHQRPVYN 536
S +T VAG W PPP AR G EV R YN
Sbjct: 18 SDATDVAGNTWDLAALPPPPPAARGGGGEVYIYRNTYN 55
>10_08_0749 -
20282982-20283632,20284081-20284141,20284828-20284872,
20285293-20285672,20286382-20287050
Length = 601
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -3
Query: 226 SVCLKSDMMKPSSHRHFSAPGPPRYEGGGLPSWTAPNKCPTS*AATMIPEKPPVSSMM 53
S+ +KS S+ + P GGG SWTAP + + AA + K + +M+
Sbjct: 164 SLPVKSTTSPSSASKATKPPQEEAASGGGSSSWTAPTQIQSMDAAELQRLKGKLYTML 221
>02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-969698,
969819-971527,971563-972514,972821-973273,974303-974497
Length = 1474
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -2
Query: 284 PHLKSGENSATARRPSETLLSVSQIRHDEAVFPSALLGSWTTEIR 150
PHL+S EN P LLS SQ EA P++L + TT R
Sbjct: 1161 PHLQSLENLELRDCPQIKLLSTSQCTKIEA--PNSLASAETTSAR 1203
>01_01_0224 - 1905978-1907084,1907489-1908070,1908653-1908667
Length = 567
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -3
Query: 151 EGGGLP--SWTAPNKCPTS*AATMIPEKPPVSSMMATE 44
+GGGL WT C S PE PP + ATE
Sbjct: 20 DGGGLAVAGWTPSGSCTLSVHDDPAPETPPPHPLSATE 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,375,515
Number of Sequences: 37544
Number of extensions: 530125
Number of successful extensions: 1864
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1864
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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