Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20127
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74037-5|CAA98493.3| 509|Caenorhabditis elegans Hypothetical pr... 38 0.007
AB044562-1|BAA96734.1| 509|Caenorhabditis elegans MIG-17 protein. 38 0.007
U42846-1|AAA83600.2| 872|Caenorhabditis elegans Hypothetical pr... 35 0.052
U29378-10|AAP40541.1| 975|Caenorhabditis elegans Adamts family ... 35 0.068
U29378-9|AAA68721.4| 1020|Caenorhabditis elegans Adamts family p... 35 0.068
AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like p... 35 0.068
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 33 0.27
Z67754-2|CAA91752.2| 677|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF100656-4|AAF99969.1| 159|Caenorhabditis elegans Hypothetical ... 29 4.5
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p... 28 5.9
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 28 7.8
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 28 7.8
>Z74037-5|CAA98493.3| 509|Caenorhabditis elegans Hypothetical
protein F57B7.4 protein.
Length = 509
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 33 EKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVHD 134
E +S +++ED G ++ AHE+GH LGA+HD
Sbjct: 280 ENGDSSSVVEDIGAGLTSLIMAHEIGHSLGALHD 313
>AB044562-1|BAA96734.1| 509|Caenorhabditis elegans MIG-17 protein.
Length = 509
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 33 EKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVHD 134
E +S +++ED G ++ AHE+GH LGA+HD
Sbjct: 280 ENGDSSSVVEDIGAGLTSLIMAHEIGHSLGALHD 313
>U42846-1|AAA83600.2| 872|Caenorhabditis elegans Hypothetical
protein T19D2.1 protein.
Length = 872
Score = 35.1 bits (77), Expect = 0.052
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Frame = +2
Query: 344 PGRLLTLDAQCRKDRGTSACFKDE--------RVCAQLFCFDAGSGYCVAYRPAAEGSPC 499
PG+L TLD QC G C+K E +C ++C + G G PA EG+ C
Sbjct: 366 PGQLFTLDEQCEIFHG--ECWKHELKDGQTMQNICQMVWCGN-GEGVIRTAHPALEGTYC 422
Query: 500 GDG 508
G G
Sbjct: 423 GFG 425
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 75 FSGIIVAAHEVGHLLGAVHD 134
F + V HE+GH LG HD
Sbjct: 280 FGSVFVVTHEMGHSLGMYHD 299
>U29378-10|AAP40541.1| 975|Caenorhabditis elegans Adamts family
protein 2, isoform c protein.
Length = 975
Score = 34.7 bits (76), Expect = 0.068
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Frame = +2
Query: 254 LQSFHHFL---NGDTATCLY--NSPHEDDSLPRVLPGRLLTLDAQCRKDRG------TSA 400
L+ +H FL +G CL N P++ + V PG++ + QC G T
Sbjct: 398 LRDYHQFLQRLDGRGKNCLRVSNMPNKLEISSNVKPGQIYDANLQCELMHGNGYQQVTPR 457
Query: 401 CFKDERVCAQLFCFDAGSGYCVAYRPAAEGSPCG 502
+ +C ++C + G + PA EG+ CG
Sbjct: 458 QDSYDGICYMMWCGQSSFGRIITSHPALEGTFCG 491
>U29378-9|AAA68721.4| 1020|Caenorhabditis elegans Adamts family
protein 2, isoform a protein.
Length = 1020
Score = 34.7 bits (76), Expect = 0.068
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Frame = +2
Query: 254 LQSFHHFL---NGDTATCLY--NSPHEDDSLPRVLPGRLLTLDAQCRKDRG------TSA 400
L+ +H FL +G CL N P++ + V PG++ + QC G T
Sbjct: 398 LRDYHQFLQRLDGRGKNCLRVSNMPNKLEISSNVKPGQIYDANLQCELMHGNGYQQVTPR 457
Query: 401 CFKDERVCAQLFCFDAGSGYCVAYRPAAEGSPCG 502
+ +C ++C + G + PA EG+ CG
Sbjct: 458 QDSYDGICYMMWCGQSSFGRIITSHPALEGTFCG 491
>AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like
protease protein.
Length = 1020
Score = 34.7 bits (76), Expect = 0.068
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Frame = +2
Query: 254 LQSFHHFL---NGDTATCLY--NSPHEDDSLPRVLPGRLLTLDAQCRKDRG------TSA 400
L+ +H FL +G CL N P++ + V PG++ + QC G T
Sbjct: 398 LRDYHQFLQRLDGRGKNCLRVSNMPNKLEISSNVKPGQIYDANLQCELMHGNGYQQVTPR 457
Query: 401 CFKDERVCAQLFCFDAGSGYCVAYRPAAEGSPCG 502
+ +C ++C + G + PA EG+ CG
Sbjct: 458 QDSYDGICYMMWCGQSSFGRIITSHPALEGTFCG 491
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 32.7 bits (71), Expect = 0.27
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Frame = +3
Query: 45 SVAIIEDTGGFSGIIVAAHEVGHLLGAVHDXXXXXXXXXXXXA---------EKCRWEDG 197
S AIIED G S AHE+GH+ HD +K ++++
Sbjct: 407 SCAIIEDNG-LSAAFTIAHELGHVFSIPHDDERKCSTYMPVNKVCKFQSTKFDKTQFQNN 465
Query: 198 F-IMS-DLRHTEKGFRWSPCSCRVFTTF 275
F IM+ L + + WSPCS + F
Sbjct: 466 FHIMAPTLEYNTHPWSWSPCSAGMLERF 493
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 32.7 bits (71), Expect = 0.27
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Frame = +3
Query: 45 SVAIIEDTGGFSGIIVAAHEVGHLLGAVHDXXXXXXXXXXXXA---------EKCRWEDG 197
S AIIED G S AHE+GH+ HD +K ++++
Sbjct: 407 SCAIIEDNG-LSAAFTIAHELGHVFSIPHDDERKCSTYMPVNKVCKFQSTKFDKTQFQNN 465
Query: 198 F-IMS-DLRHTEKGFRWSPCSCRVFTTF 275
F IM+ L + + WSPCS + F
Sbjct: 466 FHIMAPTLEYNTHPWSWSPCSAGMLERF 493
>Z67754-2|CAA91752.2| 677|Caenorhabditis elegans Hypothetical
protein C34E11.2 protein.
Length = 677
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Frame = +2
Query: 305 NSPHEDDSLPRVLPGRLLTLDAQC--RKDRGTSACFKDERVCAQLFCFDAGSGYCVAYRP 478
N+ EDD P P T++ RKD S E VC F + + P
Sbjct: 411 NAVSEDDEPPTNPPSPAPTVNVPTLPRKDYNQSPAHTPEHVCPLPRSFSSTPA-AEQFLP 469
Query: 479 AAEGSPCGDGSTASTAS 529
EG+P S STAS
Sbjct: 470 TLEGAPVWTPSAVSTAS 486
>Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical
protein T05E11.3 protein.
Length = 760
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 265 KTLQLHGDHLKPFSVCLKSDMMKPSSHRHFSAPG 164
K Q+ D K F + D +P SH HFSA G
Sbjct: 325 KPNQVEEDEYKQFYKSITKDSEEPLSHVHFSAEG 358
>AF100656-4|AAF99969.1| 159|Caenorhabditis elegans Hypothetical
protein F49F1.5 protein.
Length = 159
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -3
Query: 238 LKPFSVCLKSDMMKPSSHRHFSAPGPPRYEGGGLPSWTAPNKC 110
L+P V ++ +KP+S + S P YE P W A C
Sbjct: 96 LRPVHVGTQTTTVKPTSPKTSSTASEPCYENPICPHWAANGFC 138
>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
protein F47C12.1 protein.
Length = 1827
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 537 SYTLAVDAVLPSPHGEPSAAGRYATQYP 454
SY D + PHGE + G AT+YP
Sbjct: 102 SYKRGCDLSMTDPHGEIISPGYLATEYP 129
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +2
Query: 308 SPHEDDSLPRVLPGRLLTLDAQCRKDRGTSACFKDERVCAQLFCFDAGSGYCVAYRPAAE 487
S +DD++P V P +++ D Q K R S R Q + G +YR +
Sbjct: 777 SDDQDDTVPDV-PDQIVEQDNQSHKSRHNSENRSGGRGYGQNYSHSYGGNSTGSYRGRSS 835
Query: 488 GSPCGDG 508
G G G
Sbjct: 836 GGSGGSG 842
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +2
Query: 308 SPHEDDSLPRVLPGRLLTLDAQCRKDRGTSACFKDERVCAQLFCFDAGSGYCVAYRPAAE 487
S +DD++P V P +++ D Q K R S R Q + G +YR +
Sbjct: 774 SDDQDDTVPDV-PDQIVEQDNQSHKSRHNSENRSGGRGYGQNYSHSYGGNSTGSYRGRSS 832
Query: 488 GSPCGDG 508
G G G
Sbjct: 833 GGSGGSG 839
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -2
Query: 506 RPRMASPRRRVGTPR--STRYPRRNRTAERT 420
R R SPRRR +PR +R PRR+R+ R+
Sbjct: 113 RRRSRSPRRRSRSPRYSRSRSPRRSRSRTRS 143
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,572,974
Number of Sequences: 27780
Number of extensions: 398747
Number of successful extensions: 1231
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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