Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20127
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   3.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   3.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.1  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 83  YHRGCSRSWTFVRSGP*RQSSAFVSR 160
           YH+ CSR W  + +G   + S  +SR
Sbjct: 17  YHQRCSRDWFRISAGCVSRISNRISR 42


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 393 PVRVSRMSECALSCSVSTRVAG-TAWRTDPPPRAR 494
           PV+  R S C++ CS ++ +     WR   P + R
Sbjct: 10  PVKSFRESRCSVRCSAASGLRWFEIWRDSLPTKMR 44


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 504 SPHGEPSAAGRYATQYPLPASKQ-NS*AHTRSSLKH 400
           SP G+  A   Y   +PL  SK   S    R+S KH
Sbjct: 86  SPSGQNKAVAPYPPNHPLSGSKHLCSICGDRASGKH 121


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 504 SPHGEPSAAGRYATQYPLPASKQ-NS*AHTRSSLKH 400
           SP G+  A   Y   +PL  SK   S    R+S KH
Sbjct: 86  SPSGQNKAVAPYPPNHPLSGSKHLCSICGDRASGKH 121


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -3

Query: 487  LGGGSVRHAVPATRVETEQLSAHSLILETRTGASVLPALSVQGKETTRQHSRQR 326
            L G SV H+  +        SA ++   T    ++LP + VQ ++ ++Q  +Q+
Sbjct: 936  LSGHSVLHSAQSVVAS----SASNVTNVTTNLTTILPPVKVQSQQQSQQSQQQQ 985


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,168
Number of Sequences: 438
Number of extensions: 4563
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)