Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20127
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60230.1 68414.m06783 radical SAM domain-containing protein  ...    30   1.4  
At3g23410.1 68416.m02951 alcohol oxidase-related similar to long...    28   7.2  
At2g12610.1 68415.m01363 expressed protein ; expression supporte...    28   7.2  
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro...    27   9.6  

>At1g60230.1 68414.m06783 radical SAM domain-containing protein
           contains Pfam profile PF04055: radical SAM domain
           protein
          Length = 458

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = +2

Query: 344 PGRLLTLDAQCRKDRGTSACFKDERVCAQLFCFDAGSGYCVAYRPAAEGSPCGDGS 511
           PG L TL +    DR T++    E       CF + S    AY P+ E  P   GS
Sbjct: 32  PGTL-TLPSPLLSDRLTNSILFHESRSLSFSCFSSSSSSSAAYLPSLEEYPSAKGS 86


>At3g23410.1 68416.m02951 alcohol oxidase-related similar to long
           chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]
          Length = 746

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -3

Query: 214 KSDMMKPSSHRHFSAPGPPR-YEGGG-LPS 131
           K     PS HR F  PG  + YE GG LPS
Sbjct: 263 KGSYFTPSEHRPFEGPGLDKLYENGGILPS 292


>At2g12610.1 68415.m01363 expressed protein ; expression supported
           by MPSS
          Length = 419

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 502 GRKYCINGQCITEHENIIPDYSQ 570
           G+ Y  +GQ I E EN+IPD+++
Sbjct: 118 GQGYNEDGQKIDEQENLIPDFAE 140


>At2g43800.1 68415.m05445 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 894

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -3

Query: 196 PSSHRH-FS--APGPPRYEGGGLPSWTAPNKCPTS*AATMIPEKPPVSSMMATELTFSNL 26
           P   +H FS  A  PP       P+   P+  PTS A+   P  PP +S+       S+L
Sbjct: 74  PPHEKHLFSSVANPPPPPPSPPHPNPFFPSSDPTSTASHPPPAPPPPASLPTFPANISSL 133

Query: 25  LFTT 14
           LF T
Sbjct: 134 LFPT 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,777,857
Number of Sequences: 28952
Number of extensions: 373863
Number of successful extensions: 1007
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)