Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20126
         (654 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          26   0.31 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.1  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   6.7  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 287 LVSSKWFFPRWAQAL 331
           L+  K+FFPRW Q L
Sbjct: 646 LILDKFFFPRWRQTL 660


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 373 SKPNTATDDFKNNKPNILSLH 435
           S  NT+T    +NKPN   L+
Sbjct: 427 SNTNTSTSSTNSNKPNSSDLN 447


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = +3

Query: 165 HPWETVAQAAWRKYPNPMNPAVIGTDVVERKL*MVYFILIDW 290
           H W T+ +   +     ++    G  +V   L +V F+L  W
Sbjct: 93  HKWSTLFEILLKLESKDLSRTFYGFVIVAHLLFLVIFVLNIW 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,966
Number of Sequences: 336
Number of extensions: 3675
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)