Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20126
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.10 |||mitochondrial intermembrane space protein sorting p...    76   5e-15
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    42   6e-05
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    30   0.34 
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   2.4  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   2.4  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   7.2  

>SPBC36.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 75.8 bits (178), Expect = 5e-15
 Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
 Frame = +2

Query: 251 KKVVD-GVLHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFC 427
           +KV+D GVL+T RL++     PRW   LI  A+ CY  E S V+   R +TL T+NLTF 
Sbjct: 41  RKVLDNGVLYTERLITCHQALPRWILKLIDGAQDCYIRETSYVDLKARTLTLLTSNLTFS 100

Query: 428 HYIAVDETVRYTPHPSDSSKTLLKQEA 508
             + VDETV Y+PHP +   T+ +QEA
Sbjct: 101 DRLRVDETVTYSPHP-ELEATVFQQEA 126



 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 20/43 (46%), Positives = 28/43 (65%)
 Frame = +3

Query: 132 MKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKL 260
           MKI+ S H F +P+E V+ A W+KYPN     VI  D ++RK+
Sbjct: 1   MKIFESCHLFQYPFEQVSAAHWQKYPNEHATHVIAVDTLDRKV 43


>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 24/78 (30%), Positives = 41/78 (52%)
 Frame = +2

Query: 263 DGVLHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAV 442
           +G L+T RL+  +   PRWA  L+   K  Y  E S ++P ++++  +T NL     + V
Sbjct: 47  EGRLYTERLLVKQGRLPRWASDLLNVNK-SYILERSVIDPSKQELKSETFNLDHVKILRV 105

Query: 443 DETVRYTPHPSDSSKTLL 496
            E  R+     + SKT++
Sbjct: 106 IEYSRFIQSSENCSKTIV 123



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 138 IWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVER 254
           I T +   N  W TV+ A   +YPNP +  V+  DV+ER
Sbjct: 4   ICTDKTELNASWNTVSSAWLTRYPNPYSLHVVSADVLER 42


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
 Frame = +1

Query: 469 SFRFLKN----ITKTRSLVTVQGVPLSSYMEDLLTNKISLN 579
           SF+  +N    +  ++SL+ V+GV    +++ L TNKI+L+
Sbjct: 14  SFQLFRNYSVCLNSSKSLIRVEGVDAVKFLQGLTTNKITLD 54


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 449 FHQQQCN-DRMLGLLFLKSSVAVLGLLLISH*HN 351
           FH  Q N D++L + FL   V ++G+L  +H HN
Sbjct: 443 FHPPQMNTDQLLLVSFLGLVVNLVGILAFNHGHN 476


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
 Frame = -2

Query: 482 RNLKDVEYTVQFHQQQCNDRMLGLL--FLKSSVAVLGLLLISH*HNIFLQYQLAPGPIVE 309
           + L+ +EY +Q      ++++  LL  F+++ + VL        + I +        +V 
Sbjct: 562 QKLEILEY-LQSQSSTVSNQVFTLLSNFIQNPLFVLDECFDEFRNLILMHNSHTVHTVVW 620

Query: 308 KTIWN*PIYEYEVHHLQLSFHNICPYDGWIHR--IRIFSPCCLSNCF 174
           KTI +   Y+YE+ +  LS  N C  D  I +   R F+P  LS+ F
Sbjct: 621 KTISSWTSYDYEMQYSSLSIKN-CDSDKAIRKDLDRTFAPEILSHFF 666


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +1

Query: 364 DIRS--KPNTATDDFKNNKPN 420
           D+RS      ATDDF +NKPN
Sbjct: 209 DVRSLVAGTPATDDFSHNKPN 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,930
Number of Sequences: 5004
Number of extensions: 61659
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)