Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20126
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical pr...    71   7e-13
Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical p...    29   2.9  
U56963-7|AAQ01523.1|  526|Caenorhabditis elegans Amino acid tran...    28   5.0  
Z69794-2|CAA93681.1|  786|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical ...    28   6.7  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical
           protein F15D3.6 protein.
          Length = 209

 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 28/43 (65%), Positives = 37/43 (86%)
 Frame = +3

Query: 132 MKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKL 260
           M+IW+SEH F+H WETVAQAA+RKYPNP+N ++ G DVV++ L
Sbjct: 1   MRIWSSEHIFDHEWETVAQAAFRKYPNPLNRSITGIDVVKQTL 43



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 28/80 (35%), Positives = 47/80 (58%)
 Frame = +2

Query: 266 GVLHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVD 445
           G + T R++ S +  P WA  L G +   Y+ E + ++P +++ +L T NL    ++ VD
Sbjct: 46  GKILTERIIQSHFSIPSWATKLTGFSGTQYSHEYTVIDPTRKEFSLTTRNLNGSSFLRVD 105

Query: 446 ETVRYTPHPSDSSKTLLKQE 505
           E + YTP   D +KT+LKQ+
Sbjct: 106 EKLTYTPAHEDPNKTILKQD 125



 Score = 34.7 bits (76), Expect = 0.058
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 484 KNITKTRSLVTVQGVPLSSYMEDLLTNKISLNAGKGRQAIEWV 612
           K I K   +VT+     + Y E    +  S NA KGRQ +EWV
Sbjct: 119 KTILKQDVIVTITLPAFADYCEKTFLSIYSQNANKGRQGVEWV 161


>Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical
           protein B0334.4 protein.
          Length = 210

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +3

Query: 132 MKIWTSEHT-FNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKL 260
           MK+W S +T F + ++ VA A W +YPN     +I  DV+ER++
Sbjct: 1   MKLWDSPNTSFPYSFDEVASAFWDRYPNSHAKHIISEDVLERQI 44


>Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical
           protein F45G2.2a protein.
          Length = 1235

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 335 GTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVR 457
           GT K    +E+ E+NP + + T   +NLTF +  +V   +R
Sbjct: 66  GTPKKLTRAEVQEINPAKFEKTEDMSNLTFLNEASVLHNLR 106


>U56963-7|AAQ01523.1|  526|Caenorhabditis elegans Amino acid
           transporter protein 4 protein.
          Length = 526

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +2

Query: 353 YASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPSDSSKTLLKQEA*SLYKVCL 532
           YAS+   V  I + ++L    +T  +Y+       Y  HP + S T   Q + + Y    
Sbjct: 167 YASKFQIVVTIAKMLSLAIIIVTGFYYLIFKGQTEYLEHPFEGSNTNPGQISLAFYGALW 226

Query: 533 SVVTW 547
           S   W
Sbjct: 227 SFAGW 231


>Z69794-2|CAA93681.1|  786|Caenorhabditis elegans Hypothetical
           protein R03G8.4 protein.
          Length = 786

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 540 LHGRPFNQQNFSKCWQRKASY 602
           ++G+PF+ + F +CW  +  Y
Sbjct: 465 INGKPFDIEEFGRCWTHQTGY 485


>AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical
           protein Y39E4B.2 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 203 FSPCCLSNCFPWMVECVF*CP 141
           F+ C L +C P+M ECV  CP
Sbjct: 63  FNECLLVHCLPYMEECV--CP 81


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
           protein C08G9.2 protein.
          Length = 2224

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 551 SSM*LLRGTPCTVTKLLVLVMFLRNLKDVEYTVQFHQQQCND 426
           S M  +R TPC    L   +  LRN    +    F Q QC+D
Sbjct: 550 SCMYPVRSTPCFHLALTAELYSLRNAMKCDRAGNFEQYQCDD 591


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,627,553
Number of Sequences: 27780
Number of extensions: 342739
Number of successful extensions: 794
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)