Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20124
         (651 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CUB4 Cluster: Chromosome undetermined scaffold_28, wh...    34   3.4  
UniRef50_A3DGN4 Cluster: Putative uncharacterized protein; n=1; ...    33   5.9  
UniRef50_Q9TE82 Cluster: NADH dehydrogenase subunit 5; n=16; Euc...    33   7.8  

>UniRef50_A0CUB4 Cluster: Chromosome undetermined scaffold_28, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_28,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 475

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = -2

Query: 398 FDYCLFK*GYIFSR*FRL*LHFY-KLKAKEL*TLKILYKLKFQTIF--FF*ILSEIKASV 228
           F + LF  G+IF    +L + F  KLK+K +  LK+ YK+K   I      IL  + A V
Sbjct: 326 FSFILFTIGFIFFAVIKLGIQFKSKLKSKNINLLKVTYKVKLNEILEKSIVILGVVMAIV 385

Query: 227 LITS 216
           +I S
Sbjct: 386 VILS 389


>UniRef50_A3DGN4 Cluster: Putative uncharacterized protein; n=1;
           Clostridium thermocellum ATCC 27405|Rep: Putative
           uncharacterized protein - Clostridium thermocellum
           (strain ATCC 27405 / DSM 1237)
          Length = 222

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
 Frame = +1

Query: 346 SLNYLLKIYPYLNKQ*SNYAYFFNFDMLS--------TISLLF---VPIIEVSVTKYFLS 492
           S  +L+ +YPY N+  + YAY F  D+L+        T+   F   VP+I  S T Y ++
Sbjct: 120 SSRFLVAVYPYFNRYGAGYAYCFIRDLLANSKFAGKGTVPAQFGSNVPLIPASDTDYMIA 179

Query: 493 ICRY*YHFV 519
              Y + ++
Sbjct: 180 ALTYNFGWI 188


>UniRef50_Q9TE82 Cluster: NADH dehydrogenase subunit 5; n=16;
           Eucestoda|Rep: NADH dehydrogenase subunit 5 -
           Echinococcus multilocularis
          Length = 524

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 390 IIKLCLFL*FRYVVNYFIVVCAYNRSISDQVFLVNLSILISLCW 521
           ++ +C+FL + Y     I+ C    S+S  VF    S L+  CW
Sbjct: 360 VVGICVFLSYLYSFRLCIIFCTIKSSLSSGVFFYFSSGLMVYCW 403


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 511,378,559
Number of Sequences: 1657284
Number of extensions: 8575193
Number of successful extensions: 16186
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16184
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)