Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20124
         (651 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.2  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    22   3.8  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   3.8  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   8.8  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   8.8  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 406 YFFNFDMLSTISLLFVPIIEVSVTKYFLSICRY*YH 513
           YF+   ++ T+ LLF+  I   V   F  +C Y ++
Sbjct: 115 YFYYAFIIFTVHLLFLLCIYYFVVPLFFLLCIYYFY 150


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 451 VPIIEVSVTKYFLSICRY*YHFVGTTN*INNE 546
           +PI+ +S+ K  LS C   YH    +N ++ E
Sbjct: 273 LPIV-LSIVKNCLSYCFNLYHLASKSNQLSRE 303


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 451 VPIIEVSVTKYFLSICRY*YHFVGTTN*INNE 546
           +PI+ +S+ K  LS C   YH    +N ++ E
Sbjct: 273 LPIV-LSIVKNCLSYCFNLYHLASKSNQLSRE 303


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 394 SNYAYFFNFDMLSTISL 444
           +NY Y+ N D LS+ ++
Sbjct: 254 NNYPYYSNMDYLSSSTM 270


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 454 PIIEVSVTKYFLSI 495
           P +EV VT Y LSI
Sbjct: 63  PPVEVGVTMYVLSI 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,364
Number of Sequences: 336
Number of extensions: 2799
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)