Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20124
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    26   5.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.4  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   7.2  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   9.5  

>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 241 SRLPYLLPQYFGSSGFNWNFKIHSLKMLN 155
           S+L +L  QY        NFK+ SLKMLN
Sbjct: 373 SKLEHLDLQYKLQGSTLHNFKVESLKMLN 401


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -3

Query: 310 FKL*KYCIXXXXXXXXXXKYYLKSRLPYLLPQYF 209
           FK  K+CI             L + LPYL+P  F
Sbjct: 126 FKTFKFCIESTAQPFFDLVLELSTNLPYLIPSIF 159


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 551 NHIFSYLINYYWLMNSYRDSWFNVYIC 631
           +HIFS +   Y+L +S  DS+ +V  C
Sbjct: 322 DHIFSEIQKVYFLPSSQNDSFDDVVAC 348


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 367 IYPYLNKQ*SNYAYFFNFDMLSTISLLFVPIIEVSVTKYFLSICRY 504
           I+PY +     + +FF F + S  S LF  +       +F  +CR+
Sbjct: 97  IHPYDSNVVPFFCFFFYFSLFSFFSFLFTSL----HFNFFFRLCRH 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,532
Number of Sequences: 5004
Number of extensions: 41931
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)