Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20123
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 138 4e-34
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 137 1e-33
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 137 1e-33
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 137 1e-33
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 137 1e-33
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 86 4e-18
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 43 3e-05
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 41 1e-04
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 40 2e-04
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi... 30 0.28
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 2.6
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 2.6
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 26 4.6
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 6.1
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 8.1
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 8.1
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 138 bits (335), Expect = 4e-34
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
Query: 188 LSDYNIQKESTLHLV 232
LSDYNIQKESTLHLV
Sbjct: 132 LSDYNIQKESTLHLV 146
Score = 138 bits (335), Expect = 4e-34
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT 207
Query: 188 LSDYNIQKESTLHLV 232
LSDYNIQKESTLHLV
Sbjct: 208 LSDYNIQKESTLHLV 222
Score = 138 bits (335), Expect = 4e-34
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT 283
Query: 188 LSDYNIQKESTLHLV 232
LSDYNIQKESTLHLV
Sbjct: 284 LSDYNIQKESTLHLV 298
Score = 138 bits (335), Expect = 4e-34
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 300 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT 359
Query: 188 LSDYNIQKESTLHLV 232
LSDYNIQKESTLHLV
Sbjct: 360 LSDYNIQKESTLHLV 374
Score = 137 bits (332), Expect = 1e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 137 bits (332), Expect = 1e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 137 bits (332), Expect = 1e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 137 bits (332), Expect = 1e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 79.4 bits (187), Expect = 4e-16
Identities = 36/70 (51%), Positives = 46/70 (65%)
Frame = +1
Query: 256 KRKKKNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDR 435
KRKKK Y+TP LAVL++YKV+++G + RLRREC CGA FMA +DR
Sbjct: 79 KRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDR 136
Query: 436 HYCGKCHSTM 465
YCG+CH T+
Sbjct: 137 LYCGRCHLTL 146
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 137 bits (332), Expect = 1e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 79.4 bits (187), Expect = 4e-16
Identities = 36/70 (51%), Positives = 46/70 (65%)
Frame = +1
Query: 256 KRKKKNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDR 435
KRKKK Y+TP LAVL++YKV+++G + RLRREC CGA FMA +DR
Sbjct: 79 KRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDR 136
Query: 436 HYCGKCHSTM 465
YCG+CH T+
Sbjct: 137 LYCGRCHLTL 146
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 85.8 bits (203), Expect = 4e-18
Identities = 36/70 (51%), Positives = 53/70 (75%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
M I VKTLTGK I L+++P+D + +K ++++KEGIPP+QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 203 IQKESTLHLV 232
++ S LHLV
Sbjct: 61 LEGGSVLHLV 70
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +2
Query: 50 GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 223
GK LE+EP++T +K ++ +PP +Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 41.1 bits (92), Expect = 1e-04
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDY 199
M + K L + + +DT I +K KIQ ++ +Q+LI++G+ L D +T+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 200 NIQKE 214
NI+++
Sbjct: 61 NIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
+ + +K + + V+ ++ +K I I +QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 203 IQKESTLHLV 232
IQ ++HLV
Sbjct: 64 IQDGHSIHLV 73
>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
Hub1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 73
Score = 29.9 bits (64), Expect = 0.28
Identities = 16/69 (23%), Positives = 31/69 (44%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
+++ GK + ++ P DT+ + K + + G P + L +D TL+DY
Sbjct: 2 IEVLCNDRLGKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYE 61
Query: 203 IQKESTLHL 229
I +L +
Sbjct: 62 IHDGMSLEM 70
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 26.6 bits (56), Expect = 2.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 212 PSGYCSPRGYVHLPAAFQQRSTSVDWEGF 126
PS + PRG V+ P+ ++R + + GF
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 325 VLRFY-KVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 483
V+R Y ++ +N + R C E F V++D H KC + ++ D
Sbjct: 224 VIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 5 TRRRVKMQIFVKTLTGKTITLEVEPSDTIE--NVKAKIQDKEG 127
T++ + + F LT T T+E EP+ TI+ ++A++ +K G
Sbjct: 13 TQQYLSKRKFEDALTFITKTIEQEPNPTIDLFELRAQVYEKSG 55
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 456 VTLPAVVTVLHHRHEHSGAALLAC 385
VTL A+ T+L + H H L+AC
Sbjct: 402 VTLKAIETLLENTHSHVLPILVAC 425
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 528 SSRERSFRLEGTYLFVVVFEDHRAVTLPAV 439
+S + S+ L TYL F++HR + AV
Sbjct: 149 NSHQNSYSLNETYLSYDFFDNHRGASSSAV 178
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 134 PNQQRLIFAGKQLEDGRTLSDYNI 205
PNQ AGK+L+ R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,372
Number of Sequences: 5004
Number of extensions: 43420
Number of successful extensions: 109
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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