Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20123
(581 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 144 5e-35
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 144 5e-35
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 143 1e-34
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 143 1e-34
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 129 1e-30
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 74 7e-14
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 51 8e-07
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 47 1e-05
SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12) 38 0.006
SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 37 0.010
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 36 0.032
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.056
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 32 0.30
SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 32 0.39
SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055) 32 0.39
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.52
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 31 0.69
SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8) 29 2.1
SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026) 29 3.7
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5) 28 4.8
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07) 28 6.4
SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 28 6.4
SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 28 6.4
SB_50156| Best HMM Match : RVT_1 (HMM E-Value=7.2e-37) 27 8.5
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 27 8.5
SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12) 27 8.5
SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38) 27 8.5
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 27 8.5
SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05) 27 8.5
SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37) 27 8.5
SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 8.5
SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 8.5
SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05) 27 8.5
SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05) 27 8.5
SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 144 bits (349), Expect = 5e-35
Identities = 71/75 (94%), Positives = 72/75 (96%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
Query: 188 LSDYNIQKESTLHLV 232
LSDYNIQKESTLHLV
Sbjct: 132 LSDYNIQKESTLHLV 146
Score = 144 bits (349), Expect = 5e-35
Identities = 71/75 (94%), Positives = 72/75 (96%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 207
Query: 188 LSDYNIQKESTLHLV 232
LSDYNIQKESTLHLV
Sbjct: 208 LSDYNIQKESTLHLV 222
Score = 144 bits (349), Expect = 5e-35
Identities = 71/75 (94%), Positives = 72/75 (96%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 283
Query: 188 LSDYNIQKESTLHLV 232
LSDYNIQKESTLHLV
Sbjct: 284 LSDYNIQKESTLHLV 298
Score = 144 bits (349), Expect = 5e-35
Identities = 71/75 (94%), Positives = 72/75 (96%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 300 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 359
Query: 188 LSDYNIQKESTLHLV 232
LSDYNIQKESTLHLV
Sbjct: 360 LSDYNIQKESTLHLV 374
Score = 144 bits (349), Expect = 5e-35
Identities = 71/75 (94%), Positives = 72/75 (96%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 376 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 435
Query: 188 LSDYNIQKESTLHLV 232
LSDYNIQKESTLHLV
Sbjct: 436 LSDYNIQKESTLHLV 450
Score = 144 bits (349), Expect = 5e-35
Identities = 71/75 (94%), Positives = 72/75 (96%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 452 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 511
Query: 188 LSDYNIQKESTLHLV 232
LSDYNIQKESTLHLV
Sbjct: 512 LSDYNIQKESTLHLV 526
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 144 bits (349), Expect = 5e-35
Identities = 71/75 (94%), Positives = 72/75 (96%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
Query: 188 LSDYNIQKESTLHLV 232
LSDYNIQKESTLHLV
Sbjct: 132 LSDYNIQKESTLHLV 146
Score = 144 bits (349), Expect = 5e-35
Identities = 71/75 (94%), Positives = 72/75 (96%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 207
Query: 188 LSDYNIQKESTLHLV 232
LSDYNIQKESTLHLV
Sbjct: 208 LSDYNIQKESTLHLV 222
Score = 144 bits (349), Expect = 5e-35
Identities = 71/75 (94%), Positives = 72/75 (96%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 283
Query: 188 LSDYNIQKESTLHLV 232
LSDYNIQKESTLHLV
Sbjct: 284 LSDYNIQKESTLHLV 298
Score = 144 bits (349), Expect = 5e-35
Identities = 71/75 (94%), Positives = 72/75 (96%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 300 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 359
Query: 188 LSDYNIQKESTLHLV 232
LSDYNIQKESTLHLV
Sbjct: 360 LSDYNIQKESTLHLV 374
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 99.5 bits (237), Expect = 2e-21
Identities = 47/72 (65%), Positives = 50/72 (69%)
Frame = +1
Query: 256 KRKKKNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDR 435
KRKKKNY+TP LAVL++YKVDENGKI RLRREC E CGAGVFMA DR
Sbjct: 79 KRKKKNYTTPKKIKHKKKKVKLAVLKYYKVDENGKITRLRRECPSESCGAGVFMASHFDR 138
Query: 436 HYCGKCHSTMVF 471
YCGKC T VF
Sbjct: 139 QYCGKCCLTYVF 150
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 82.2 bits (194), Expect = 3e-16
Identities = 42/74 (56%), Positives = 55/74 (74%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQI VK KT TL+VE SDT+E+VK KIQ++EGIPP QRL++ ++L D R+
Sbjct: 72 RLRGGMQISVKA-HWKTFTLDVEASDTVESVKEKIQNREGIPPKVQRLLYEEEELVDNRS 130
Query: 188 LSDYNIQKESTLHL 229
L+DYNI++ S LHL
Sbjct: 131 LADYNIKQGSILHL 144
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 129 bits (312), Expect = 1e-30
Identities = 62/63 (98%), Positives = 63/63 (100%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 79 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 138
Query: 203 IQK 211
IQK
Sbjct: 139 IQK 141
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 74.1 bits (174), Expect = 7e-14
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +2
Query: 128 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 232
IPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 36
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 50.8 bits (116), Expect = 8e-07
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +2
Query: 29 IFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 205
I V TLTG+ I + + P TI VK I+ K G P +QQRL+F G+ L D T I
Sbjct: 73 IAVLTLTGERILIPFKSPKHTIIEVKYLIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGI 132
Query: 206 QKESTLHLV 232
+TLHL+
Sbjct: 133 FAGATLHLI 141
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +2
Query: 11 RRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ---DKEGIPPNQQRLIFAGKQLEDG 181
+ V M I KTL +T +E+ +T+ +K KI+ K+ P +LI+AGK L D
Sbjct: 63 KSVNMIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDD 122
Query: 182 RTLSDYNIQKES 217
L +YNI ++S
Sbjct: 123 NPLKEYNIDEKS 134
>SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)
Length = 348
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED-GRTLSDY 199
M++ V G TL+V +EN +A ++ + G+P ++ L G QL D +TL+ Y
Sbjct: 1 MKVTVTGEDGSIFTLDVSVDLEVENFRALLEFESGVPASEISLYHDGVQLSDLKKTLTAY 60
Query: 200 NIQKESTLHLV 232
++++ + +V
Sbjct: 61 SVKENDVILMV 71
>SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 35
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 124
M ++++TLTG L V P +TI +VKAKIQ E
Sbjct: 1 MDLYIQTLTGTAFELRVSPFETIMSVKAKIQRLE 34
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 26 QIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
Q+F T TL +D + +K++I+ K GIP + QRL F K+L D TL+ N
Sbjct: 7 QVFAALPTEDVCTLRDLTTDMHVFQLKSRIELKTGIPGDIQRLHFMNKELYDDATLAKVN 66
Query: 203 IQK 211
+++
Sbjct: 67 LKQ 69
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 35.5 bits (78), Expect = 0.032
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQ+ VKTL +T T V +EGIP +QRLIF GK L+D + L +++
Sbjct: 1 MQVTVKTLDSETRTFTVS--------------EEGIPAERQRLIFKGKVLQDEKKLKEFD 46
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 34.7 bits (76), Expect = 0.056
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = +2
Query: 14 RVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLS 193
R+++ + +G L++ + TIE ++ ++ DK G PP QR I K + +L
Sbjct: 33 RLRVVVEDSETSGGAFNLQIPLNTTIEKLQNEVADKYGFPPKVQRWIIGKKMAKPNESLL 92
Query: 194 DYNIQK 211
+++
Sbjct: 93 QCKVRE 98
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 125 GIPPNQQRLIFAGKQLEDGRTLSDYN 202
GIP +QRLIF GK L+D + L +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFD 26
>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 1240
Score = 31.9 bits (69), Expect = 0.39
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +2
Query: 458 ARWSSKTTTNK*VPSSLKERSRLLCMMDFK*NLDTVSELKK 580
AR S+TTT+ P LKE SR C+ + NLD KK
Sbjct: 1079 ARLVSRTTTHFSTPQKLKEASRSYCVENILKNLDIQEFFKK 1119
>SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055)
Length = 411
Score = 31.9 bits (69), Expect = 0.39
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 32 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQK 211
FV G+ ITL P + ++ + G P ++ K LED T++D + Q
Sbjct: 169 FVVMPEGQVITLHCNPRQSFSELRNHFSSEFGQPAEAILMLHEDKILEDQGTIADLSHQP 228
Query: 212 ESTLHL 229
+TL +
Sbjct: 229 GATLQI 234
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 31.5 bits (68), Expect = 0.52
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 86 TIENVKAKIQDKEGIPPNQQRLIFA-GKQLEDGRTLSDYNIQKESTLHL 229
T+ ++K + +K G+ + RL+ GK++ D L DYNI T+ L
Sbjct: 86 TVGDLKTMVTNKTGLHVSVFRLVIPEGKEMFDCNLLKDYNISTGDTIRL 134
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 31.1 bits (67), Expect = 0.69
Identities = 16/64 (25%), Positives = 34/64 (53%)
Frame = +2
Query: 29 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQ 208
+ ++T G T+ +E+ ++E++KA+ + + GIP RL LED + +
Sbjct: 185 MLLQTRGGSTLEIEITERTSVEDLKAEAELRVGIPVELIRLQVNKVNLEDSEKICERGHL 244
Query: 209 KEST 220
+++T
Sbjct: 245 QKAT 248
>SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8)
Length = 180
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 76 AVRYHRECES*NSRQRGNPSQSTEVDLCWKAAGRWTYPLGLQY 204
+ Y +E E + RQR +S E D+C K R+T Y
Sbjct: 39 STEYTQESEGLDERQRARGKKSFECDICGKCFSRFTITTKYNY 81
>SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026)
Length = 309
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +2
Query: 35 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGR---TLSDYNI 205
V + G+T + P +I +K KI + +QRL++ +L++ + LS++ +
Sbjct: 60 VAMMGGETTVIPYNPVMSIAELKLKISQNIRVDRLKQRLMYNDTELKENKGSGKLSEFGV 119
Query: 206 QKESTLHLV 232
+T+ L+
Sbjct: 120 PPYATISLI 128
>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
Length = 635
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 349 ENGKIHRLRRECTGEQC 399
+ G+IH L++EC G QC
Sbjct: 106 DGGEIHNLQQECIGSQC 122
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 444 AVVTVLHHRHEHSGA 400
A++TV+HHRH H A
Sbjct: 525 AIITVIHHRHHHHPA 539
>SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)
Length = 1105
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 118 QRGNPSQSTEVDLCWKAAGRWTYPLGLQYPEGIHPPPGVEAS 243
QRG S+ T + W+ +G + L IHPP V S
Sbjct: 299 QRGVSSRKTMISKAWQVSGVYHITLDANVTPVIHPPRRVAIS 340
>SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 794
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 337 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRH 438
YK D GK+ L+R C ++C ++ V D +
Sbjct: 364 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVDNN 397
>SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 337 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHS 459
YK D GK+ L+R C ++C + + C +C S
Sbjct: 515 YKCDNCGKVGHLKRVCQSKECKKXXXXQGGKPKTACHRCGS 555
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 337 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 432
YK D GK+ L+R C ++C ++ V D
Sbjct: 568 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 599
>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 1750
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 337 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRH 438
YK D GK+ L+R C ++C ++ V D +
Sbjct: 207 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVDNN 240
>SB_50156| Best HMM Match : RVT_1 (HMM E-Value=7.2e-37)
Length = 493
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 337 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 432
YK D GK+ L+R C ++C ++ V D
Sbjct: 63 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 94
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 337 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 432
YK D GK+ L+R C ++C ++ V D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260
>SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12)
Length = 481
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +2
Query: 44 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE 175
L G +IT+ +E D +EN++ +K+ +PP ++L+F + L+
Sbjct: 102 LGGNSITV-IEGLDKLENLRELHMEKQHLPPG-EKLLFDPRTLQ 143
>SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38)
Length = 856
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 337 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 432
YK D GK+ L+R C ++C ++ V D
Sbjct: 372 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 403
>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 1425
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 337 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 432
YK D GK+ L+R C ++C ++ V D
Sbjct: 898 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 929
>SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05)
Length = 403
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 337 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 432
YK D GK+ L+R C ++C ++ V D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260
>SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37)
Length = 1122
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 337 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 432
YK D GK+ L+R C ++C ++ V D
Sbjct: 245 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 276
>SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 342
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 337 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 432
YK D GK+ L+R C ++C ++ V D
Sbjct: 202 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 233
>SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 369
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 337 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 432
YK D GK+ L+R C ++C ++ V D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260
>SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05)
Length = 415
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 337 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 432
YK D GK+ L+R C ++C ++ V D
Sbjct: 66 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 97
>SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)
Length = 717
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 337 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 432
YK D GK+ L+R C ++C ++ V D
Sbjct: 268 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 299
>SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 337 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 432
YK D GK+ L+R C ++C ++ V D
Sbjct: 428 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 459
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,427,142
Number of Sequences: 59808
Number of extensions: 361746
Number of successful extensions: 932
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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