Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20123
(581 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677 138 2e-33
At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to GI:92... 138 2e-33
At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to GI:92... 138 2e-33
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 138 2e-33
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 138 2e-33
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 138 2e-33
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 138 2e-33
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 138 2e-33
At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to GI:3... 138 2e-33
At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to GI:1... 138 2e-33
At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to GI:1... 138 2e-33
At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to GI:1... 138 2e-33
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 137 4e-33
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 137 4e-33
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 137 4e-33
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 137 4e-33
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER... 137 4e-33
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 137 4e-33
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER... 137 4e-33
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /... 137 4e-33
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 137 6e-33
At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to poly... 137 6e-33
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 131 4e-31
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ... 111 3e-25
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 85 3e-17
At1g53950.1 68414.m06145 ubiquitin family protein contains INTER... 66 1e-11
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER... 65 4e-11
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 61 5e-10
At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi... 55 4e-08
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER... 54 7e-08
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 52 2e-07
At4g02970.1 68417.m00404 ubiquitin family protein contains INTER... 50 9e-07
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 50 1e-06
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 50 1e-06
At3g13235.1 68416.m01666 ubiquitin family protein contains INTER... 48 3e-06
At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi... 48 3e-06
At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi... 48 3e-06
At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi... 48 3e-06
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 48 3e-06
At4g03350.1 68417.m00457 ubiquitin family protein contains INTER... 48 6e-06
At5g11080.1 68418.m01294 ubiquitin family protein contains INTER... 47 8e-06
At4g03370.1 68417.m00459 ubiquitin family protein contains INTER... 47 1e-05
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 46 2e-05
At4g01000.1 68417.m00135 ubiquitin family protein low similarity... 45 3e-05
At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase fa... 44 6e-05
At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase fa... 44 6e-05
At4g05230.1 68417.m00789 ubiquitin family protein contains INTER... 44 7e-05
At5g09340.1 68418.m01082 ubiquitin, putative similar to ubiquiti... 44 1e-04
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 44 1e-04
At2g30100.1 68415.m03663 ubiquitin family protein low similarity... 43 2e-04
At5g16090.1 68418.m01880 ubiquitin family protein contains INTER... 41 5e-04
At3g06455.1 68416.m00747 splicing factor-related contains weak s... 40 0.001
At4g03360.1 68417.m00458 ubiquitin family protein contains INTER... 40 0.001
At5g24240.1 68418.m02852 phosphatidylinositol 3- and 4-kinase fa... 40 0.002
At4g02950.1 68417.m00402 ubiquitin family protein contains INTER... 40 0.002
At1g53980.1 68414.m06149 polyubiquitin-related contains similari... 39 0.002
At4g05250.1 68417.m00793 ubiquitin family protein contains INTER... 39 0.003
At4g05310.1 68417.m00809 ubiquitin family protein contains INTER... 37 0.009
At4g05270.1 68417.m00797 ubiquitin family protein contains INTER... 37 0.009
At5g14360.1 68418.m01678 ubiquitin family protein contains INTER... 35 0.045
At1g26270.1 68414.m03205 phosphatidylinositol 3- and 4-kinase fa... 34 0.060
At1g11970.1 68414.m01383 hypothetical protein 33 0.11
At5g40630.1 68418.m04932 ubiquitin family protein contains INTER... 33 0.18
At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N domain-... 31 0.42
At1g64470.1 68414.m07309 ubiquitin family protein contains INTER... 31 0.42
At3g14130.1 68416.m01787 (S)-2-hydroxy-acid oxidase, peroxisomal... 30 1.3
At1g22050.1 68414.m02758 ubiquitin family protein contains INTER... 30 1.3
At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp... 30 1.3
At5g12280.1 68418.m01444 hypothetical protein 29 1.7
At3g14150.1 68416.m01789 (S)-2-hydroxy-acid oxidase, peroxisomal... 29 2.3
At1g47680.1 68414.m05297 hypothetical protein 29 2.3
At2g25840.2 68415.m03101 tRNA synthetase class I (W and Y) famil... 28 4.0
At2g25840.1 68415.m03100 tRNA synthetase class I (W and Y) famil... 28 4.0
At4g18360.1 68417.m02723 (S)-2-hydroxy-acid oxidase, peroxisomal... 28 5.2
At2g20420.1 68415.m02383 succinyl-CoA ligase [GDP-forming] beta-... 27 6.9
At1g78020.1 68414.m09092 senescence-associated protein-related s... 27 9.1
>At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677
Length = 382
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 132 LADYNIQKESTLHLV 146
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 207
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 208 LADYNIQKESTLHLV 222
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 283
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 284 LADYNIQKESTLHLV 298
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 300 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 359
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 360 LADYNIQKESTLHLV 374
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 132 LADYNIQKESTLHLV 146
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 207
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 208 LADYNIQKESTLHLV 222
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 283
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 284 LADYNIQKESTLHLV 298
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 132 LADYNIQKESTLHLV 146
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 207
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 208 LADYNIQKESTLHLV 222
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 283
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 284 LADYNIQKESTLHLV 298
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 132 LADYNIQKESTLHLV 146
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 207
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 208 LADYNIQKESTLHLV 222
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 67.7 bits (158), Expect = 5e-12
Identities = 34/39 (87%), Positives = 35/39 (89%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 124
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 262
Score = 31.5 bits (68), Expect = 0.42
Identities = 22/49 (44%), Positives = 26/49 (53%)
Frame = +3
Query: 102 KLKFKTKRESLPINRG*SLLESSWKMDVPSRTTISRRNPPSTWC*GFVV 248
K K + K L + S LESS +MDV TT SRR+ TW FVV
Sbjct: 255 KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTWSCVFVV 303
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 132 LADYNIQKESTLHLV 146
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 207
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 208 LADYNIQKESTLHLV 222
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 283
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 284 LADYNIQKESTLHLV 298
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 300 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 359
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 360 LADYNIQKESTLHLV 374
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 67.7 bits (158), Expect = 5e-12
Identities = 34/39 (87%), Positives = 35/39 (89%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 124
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE
Sbjct: 376 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 414
Score = 31.5 bits (68), Expect = 0.42
Identities = 22/49 (44%), Positives = 26/49 (53%)
Frame = +3
Query: 102 KLKFKTKRESLPINRG*SLLESSWKMDVPSRTTISRRNPPSTWC*GFVV 248
K K + K L + S LESS +MDV TT SRR+ TW FVV
Sbjct: 407 KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTWSCVFVV 455
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 132 LADYNIQKESTLHLV 146
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 207
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 208 LADYNIQKESTLHLV 222
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 283
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 284 LADYNIQKESTLHLV 298
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 67.7 bits (158), Expect = 5e-12
Identities = 34/39 (87%), Positives = 35/39 (89%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 124
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE
Sbjct: 300 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 338
Score = 31.5 bits (68), Expect = 0.42
Identities = 22/49 (44%), Positives = 26/49 (53%)
Frame = +3
Query: 102 KLKFKTKRESLPINRG*SLLESSWKMDVPSRTTISRRNPPSTWC*GFVV 248
K K + K L + S LESS +MDV TT SRR+ TW FVV
Sbjct: 331 KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTWSCVFVV 379
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 132 LADYNIQKESTLHLV 146
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 207
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 208 LADYNIQKESTLHLV 222
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 283
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 284 LADYNIQKESTLHLV 298
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 300 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 359
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 360 LADYNIQKESTLHLV 374
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 67.7 bits (158), Expect = 5e-12
Identities = 34/39 (87%), Positives = 35/39 (89%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 124
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE
Sbjct: 376 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 414
Score = 31.5 bits (68), Expect = 0.42
Identities = 22/49 (44%), Positives = 26/49 (53%)
Frame = +3
Query: 102 KLKFKTKRESLPINRG*SLLESSWKMDVPSRTTISRRNPPSTWC*GFVV 248
K K + K L + S LESS +MDV TT SRR+ TW FVV
Sbjct: 407 KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTWSCVFVV 455
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 132 LADYNIQKESTLHLV 146
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 207
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 208 LADYNIQKESTLHLV 222
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 283
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 284 LADYNIQKESTLHLV 298
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 67.7 bits (158), Expect = 5e-12
Identities = 34/39 (87%), Positives = 35/39 (89%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 124
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE
Sbjct: 300 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 338
Score = 31.5 bits (68), Expect = 0.42
Identities = 22/49 (44%), Positives = 26/49 (53%)
Frame = +3
Query: 102 KLKFKTKRESLPINRG*SLLESSWKMDVPSRTTISRRNPPSTWC*GFVV 248
K K + K L + S LESS +MDV TT SRR+ TW FVV
Sbjct: 331 KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTWSCVFVV 379
>At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to
GI:304117
Length = 229
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 132 LADYNIQKESTLHLV 146
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 207
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 208 LADYNIQKESTLHLV 222
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 132 LADYNIQKESTLHLV 146
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 207
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 208 LADYNIQKESTLHLV 222
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 283
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 284 LADYNIQKESTLHLV 298
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 229
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 132 LADYNIQKESTLHLV 146
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 207
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 208 LADYNIQKESTLHLV 222
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 132 LADYNIQKESTLHLV 146
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 207
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 208 LADYNIQKESTLHLV 222
Score = 138 bits (335), Expect = 2e-33
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 283
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 284 LADYNIQKESTLHLV 298
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
ribosomal protein S27A (RPS27aC) identical to GI:166933,
GI:166934
Length = 157
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 88.2 bits (209), Expect = 3e-18
Identities = 39/75 (52%), Positives = 48/75 (64%)
Frame = +1
Query: 256 KRKKKNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDR 435
KRKKK Y+ P LAVL+FYK+D +GK+ RLR+EC CGAG FMA DR
Sbjct: 79 KRKKKTYTKPKKIKHKHKKVKLAVLQFYKIDGSGKVQRLRKECPNATCGAGTFMASHFDR 138
Query: 436 HYCGKCHSTMVFKDD 480
HYCGKC T V++ +
Sbjct: 139 HYCGKCGLTYVYQKE 153
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / 60S
ribosomal protein L40 (RPL40B) identical to GI:166929,
GI:166930
Length = 128
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
ribosomal protein S27A (RPS27aB) identical to GI:166936
Length = 157
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 88.6 bits (210), Expect = 3e-18
Identities = 40/75 (53%), Positives = 48/75 (64%)
Frame = +1
Query: 256 KRKKKNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDR 435
KRKKK Y+ P LAVL+FYKVD +GK+ RLR+EC CGAG FMA DR
Sbjct: 79 KRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKECPNATCGAGTFMASHFDR 138
Query: 436 HYCGKCHSTMVFKDD 480
HYCGKC T V++ +
Sbjct: 139 HYCGKCGLTYVYQKE 153
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / 60S
ribosomal protein L40 (RPL40A) identical to GI:166930,
GI:166931
Length = 128
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>At2g35635.1 68415.m04370 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 154
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 92.7 bits (220), Expect = 2e-19
Identities = 43/75 (57%), Positives = 56/75 (74%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R I VKTLTGK I +++EP+DTI+ +K ++++KEGIPP QQRLI+AGKQL D +T
Sbjct: 72 RLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKT 131
Query: 188 LSDYNIQKESTLHLV 232
DY I+ S LHLV
Sbjct: 132 AKDYAIEGGSVLHLV 146
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 135 bits (327), Expect = 2e-32
Identities = 67/75 (89%), Positives = 70/75 (93%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPP+QQRLIFAGKQLEDGRT
Sbjct: 147 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEWIPPDQQRLIFAGKQLEDGRT 206
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 207 LADYNIQKESTLHLV 221
Score = 131 bits (317), Expect = 3e-31
Identities = 67/75 (89%), Positives = 70/75 (93%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
Query: 188 LSDYNIQKESTLHLV 232
L+D NIQKESTLHLV
Sbjct: 132 LAD-NIQKESTLHLV 145
Score = 100 bits (239), Expect = 8e-22
Identities = 50/58 (86%), Positives = 52/58 (89%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDG 181
R R MQIFVKTLTGKTITLEVE S TI+NVKAKIQDKEGIPP+QQRLIFAGKQLE G
Sbjct: 223 RLRGGMQIFVKTLTGKTITLEVESSGTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEGG 280
>At1g31340.1 68414.m03835 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 156
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 95.9 bits (228), Expect = 2e-20
Identities = 44/75 (58%), Positives = 57/75 (76%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R I VKTLTGK I +++EP+DTI+ +K ++++KEGIPP QQRLI+AGKQL D +T
Sbjct: 72 RLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKT 131
Query: 188 LSDYNIQKESTLHLV 232
DYNI+ S LHLV
Sbjct: 132 AKDYNIEGGSVLHLV 146
>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
40S ribosomal protein S27A (RPS27aA) strong similarity
to ubiquitin extension protein (UBQ5) GB:AAA32906
GI:166934 from (Arabidopsis thaliana)
Length = 156
Score = 137 bits (332), Expect = 4e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 90.6 bits (215), Expect = 7e-19
Identities = 41/77 (53%), Positives = 49/77 (63%)
Frame = +1
Query: 256 KRKKKNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDR 435
KRKKK Y+ P LAVL+FYKVD +GK+ RL++EC CG G FMA DR
Sbjct: 79 KRKKKTYTKPKKIKHTHKKVKLAVLQFYKVDGSGKVQRLKKECPSVSCGPGTFMASHFDR 138
Query: 436 HYCGKCHSTMVFKDDDK 486
HYCGKC +T VFK D+
Sbjct: 139 HYCGKCGTTYVFKKADE 155
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 137 bits (331), Expect = 6e-33
Identities = 66/75 (88%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG+PP+QQRLIFAGKQL+DGRT
Sbjct: 74 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGVPPDQQRLIFAGKQLDDGRT 133
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 134 LADYNIQKESTLHLV 148
Score = 130 bits (314), Expect = 7e-31
Identities = 64/75 (85%), Positives = 68/75 (90%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFV+TLT KTI LEVE SDT +NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 150 RLRGGMQIFVRTLTRKTIALEVESSDTTDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 209
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 210 LADYNIQKESTLHLV 224
Score = 120 bits (289), Expect = 7e-28
Identities = 61/71 (85%), Positives = 65/71 (91%), Gaps = 1/71 (1%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDG-RTLSDY 199
MQIFV TLTGKTITLEVE SDTI+NVKAKIQDKE I P+QQRLIFAG+QLEDG TL+DY
Sbjct: 231 MQIFVNTLTGKTITLEVESSDTIDNVKAKIQDKERIQPDQQRLIFAGEQLEDGYYTLADY 290
Query: 200 NIQKESTLHLV 232
NIQKESTLHLV
Sbjct: 291 NIQKESTLHLV 301
Score = 105 bits (251), Expect = 3e-23
Identities = 51/71 (71%), Positives = 60/71 (84%)
Frame = +2
Query: 17 VKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSD 196
+ MQI KTLT KTIT++V SDTI NVKAKIQD EGIP +QQRLIF+GK L+DGRTL+D
Sbjct: 1 MSMQIHAKTLTEKTITIDVVSSDTINNVKAKIQDIEGIPLDQQRLIFSGKLLDDGRTLAD 60
Query: 197 YNIQKESTLHL 229
Y+IQK+S LHL
Sbjct: 61 YSIQKDSILHL 71
>At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to
polyubiquitin (ubq12) gene sequence GI:304121 from
[Arabidopsis thaliana]
Length = 230
Score = 137 bits (331), Expect = 6e-33
Identities = 67/75 (89%), Positives = 71/75 (94%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+N+KAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 72 RFRGGMQIFVKTLTGKTITLEVESSDTIDNLKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 132 LADYNIQKESTLHLV 146
Score = 132 bits (320), Expect = 1e-31
Identities = 66/75 (88%), Positives = 69/75 (92%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI P+QQRLIFAGKQ EDGRT
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGISPDQQRLIFAGKQHEDGRT 207
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 208 LADYNIQKESTLHLV 222
Score = 122 bits (293), Expect = 2e-28
Identities = 57/70 (81%), Positives = 65/70 (92%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIF+KTLTGKT LEVE SDTI+NVKAKIQD EGIPP+Q RLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFLKTLTGKTKVLEVESSDTIDNVKAKIQDIEGIPPDQHRLIFAGKQLEDGRTLADYN 60
Query: 203 IQKESTLHLV 232
+Q++STLHL+
Sbjct: 61 VQEDSTLHLL 70
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 131 bits (316), Expect = 4e-31
Identities = 65/75 (86%), Positives = 69/75 (92%)
Frame = +2
Query: 8 RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
R R MQIFV+TLTGKTITLEV+ SDTI+NVKAKIQDKEGI P QQRLIFAGKQLEDGRT
Sbjct: 74 RLRGGMQIFVQTLTGKTITLEVKSSDTIDNVKAKIQDKEGILPRQQRLIFAGKQLEDGRT 133
Query: 188 LSDYNIQKESTLHLV 232
L+DYNIQKESTLHLV
Sbjct: 134 LADYNIQKESTLHLV 148
Score = 117 bits (282), Expect = 5e-27
Identities = 57/70 (81%), Positives = 64/70 (91%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
+QI+ KTLT KTITL+VE SD+I NVKAKIQ+KEGIP +QQRLIFAGKQLEDG TL+DYN
Sbjct: 3 IQIYAKTLTEKTITLDVETSDSIHNVKAKIQNKEGIPLDQQRLIFAGKQLEDGLTLADYN 62
Query: 203 IQKESTLHLV 232
IQKESTLHLV
Sbjct: 63 IQKESTLHLV 72
Score = 109 bits (263), Expect = 1e-24
Identities = 58/78 (74%), Positives = 63/78 (80%), Gaps = 2/78 (2%)
Frame = +2
Query: 5 TRRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI--PPNQQRLIFAGKQLED 178
TR R MQIFVKTLT K I LEVE DTIENVKA +QDKEGI PN QRLIF GK+L+D
Sbjct: 313 TRFRCGMQIFVKTLTRKRINLEVESWDTIENVKAMVQDKEGIQPQPNLQRLIFLGKELKD 372
Query: 179 GRTLSDYNIQKESTLHLV 232
G TL+DY+IQKESTLHLV
Sbjct: 373 GCTLADYSIQKESTLHLV 390
Score = 107 bits (256), Expect = 7e-24
Identities = 54/74 (72%), Positives = 61/74 (82%)
Frame = +2
Query: 11 RRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL 190
+R MQIF+KTLTGKTI LEVE SDTI NVK KIQ KEGI P+QQ LIF G+QLEDG TL
Sbjct: 548 QRGGMQIFIKTLTGKTIILEVESSDTIANVKEKIQVKEGIKPDQQMLIFFGQQLEDGVTL 607
Query: 191 SDYNIQKESTLHLV 232
DY+I K+STL+LV
Sbjct: 608 GDYDIHKKSTLYLV 621
Score = 101 bits (243), Expect = 3e-22
Identities = 50/69 (72%), Positives = 56/69 (81%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
MQIFVK GK ITLEV SDTI++VKAKIQDK G PP+QQ L+F G QL+DGRTL DYN
Sbjct: 393 MQIFVKLFGGKIITLEVLSSDTIKSVKAKIQDKVGSPPDQQILLFRGGQLQDGRTLGDYN 452
Query: 203 IQKESTLHL 229
I+ ESTLHL
Sbjct: 453 IRNESTLHL 461
Score = 93.9 bits (223), Expect = 7e-20
Identities = 52/80 (65%), Positives = 58/80 (72%), Gaps = 5/80 (6%)
Frame = +2
Query: 8 RRRVKMQIFVKTL-----TGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQL 172
R R M IFVK L TG+ LEVE SDTI+NVKAK+QDKE IP + RLIFAGK L
Sbjct: 233 RLRGDMYIFVKNLPYNSFTGENFILEVESSDTIDNVKAKLQDKERIPMDLHRLIFAGKPL 292
Query: 173 EDGRTLSDYNIQKESTLHLV 232
E GRTL+ YNIQK STL+LV
Sbjct: 293 EGGRTLAHYNIQKGSTLYLV 312
Score = 89.0 bits (211), Expect = 2e-18
Identities = 48/76 (63%), Positives = 58/76 (76%), Gaps = 7/76 (9%)
Frame = +2
Query: 23 MQIFVKTLTGK-----TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQL--EDG 181
MQIFV T +GK T+TL+VE SDTIENVKAKIQD+EG+ P+ QRLIF G++L ED
Sbjct: 155 MQIFVSTFSGKNFTSDTLTLKVESSDTIENVKAKIQDREGLRPDHQRLIFHGEELFTEDN 214
Query: 182 RTLSDYNIQKESTLHL 229
RTL+DY I+ STL L
Sbjct: 215 RTLADYGIRNRSTLCL 230
Score = 88.6 bits (210), Expect = 3e-18
Identities = 49/75 (65%), Positives = 54/75 (72%), Gaps = 7/75 (9%)
Frame = +2
Query: 23 MQIFVKTL-------TGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDG 181
MQIFVKT T KTITLEVE SDTI+NVK KIQ K GIP ++QRLIF G+ L
Sbjct: 469 MQIFVKTFSFSGETPTCKTITLEVESSDTIDNVKVKIQHKVGIPLDRQRLIFGGRVLVGS 528
Query: 182 RTLSDYNIQKESTLH 226
RTL DYNIQK ST+H
Sbjct: 529 RTLLDYNIQKGSTIH 543
>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
profile: PF00240 ubiquitin family
Length = 158
Score = 111 bits (267), Expect = 3e-25
Identities = 53/74 (71%), Positives = 61/74 (82%)
Frame = +2
Query: 11 RRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL 190
R M IF+KTLTG+ I LEVE DTIEN+KAKIQDK+GIP +QQRLIF GKQLEDG TL
Sbjct: 82 RHEVMFIFIKTLTGRRIVLEVENCDTIENIKAKIQDKQGIPVDQQRLIFKGKQLEDGLTL 141
Query: 191 SDYNIQKESTLHLV 232
+DYNIQ +S LHL+
Sbjct: 142 ADYNIQNDSILHLI 155
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 85.0 bits (201), Expect = 3e-17
Identities = 38/70 (54%), Positives = 52/70 (74%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
M+I VKTLT K I +E+E +DTIE +K +I++KEGIPP QR+++ GKQL D T YN
Sbjct: 1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYN 60
Query: 203 IQKESTLHLV 232
+++ S LHLV
Sbjct: 61 LERGSVLHLV 70
>At1g53950.1 68414.m06145 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 216
Score = 66.5 bits (155), Expect = 1e-11
Identities = 31/48 (64%), Positives = 38/48 (79%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGK 166
M IF+KTLTG+T T EV+ SDTI +KAK ++KEGIP QQRLIF G+
Sbjct: 50 MMIFIKTLTGRTNTYEVKGSDTIRELKAKHEEKEGIPVEQQRLIFQGR 97
Score = 64.5 bits (150), Expect = 5e-11
Identities = 32/69 (46%), Positives = 47/69 (68%)
Frame = +2
Query: 17 VKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSD 196
V M+IFV T+ KT LEV+ SDTI+ +K+ I D+ G P +QQ L G +L++ T+SD
Sbjct: 139 VLMRIFVSTIKEKTFILEVKGSDTIKKLKSMIHDQGGPPVDQQDLNHLGTKLKNNATISD 198
Query: 197 YNIQKESTL 223
YNI+ ++ L
Sbjct: 199 YNIKPDANL 207
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVK 103
M I +KTL GK I LEVE S ++K
Sbjct: 1 MHISIKTLEGKRIKLEVEDSSNTIDLK 27
>At5g42220.1 68418.m05139 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 879
Score = 64.9 bits (151), Expect = 4e-11
Identities = 28/70 (40%), Positives = 46/70 (65%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
+++ +KTL +T T +V ++T+ K KI + G+P QQRLIF G+ L+D LS+Y+
Sbjct: 24 LELNIKTLDSRTYTFQVNKNETVLLFKEKIASETGVPVGQQRLIFRGRVLKDDHPLSEYH 83
Query: 203 IQKESTLHLV 232
++ TLHL+
Sbjct: 84 LENGHTLHLI 93
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 61.3 bits (142), Expect = 5e-10
Identities = 29/72 (40%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Frame = +2
Query: 20 KMQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSD 196
++QIFV+ ++G KTI + E DT+E + +I+ K IP +QR+I+ GKQL+ +L+
Sbjct: 94 RLQIFVRMMSGGKTIVIHAEKYDTVEKLHQRIEWKTKIPALEQRVIYKGKQLQRENSLTY 153
Query: 197 YNIQKESTLHLV 232
Y+I+++++L LV
Sbjct: 154 YSIEQDASLQLV 165
>At5g38470.1 68418.m04650 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform I GI:1914683 from [Daucus carota]
Length = 378
Score = 54.8 bits (126), Expect = 4e-08
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPNQQRLIFAGKQLEDGRTLSD 196
M+IFVKTL+G +EV+P+D + +VK I+ +G P +Q LI GK L+D TL +
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEE 60
Query: 197 YNIQKES 217
N+ + S
Sbjct: 61 NNVVENS 67
>At2g17190.1 68415.m01985 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 538
Score = 54.0 bits (124), Expect = 7e-08
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +2
Query: 5 TRRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGR 184
T V + + V+ G ++ T+E+ K I +P NQQRLI+ G+ L+D +
Sbjct: 12 TAEGVAVAVNVRCSNGTKFSVTTSLDSTVESFKELIAQNSDVPANQQRLIYKGRILKDDQ 71
Query: 185 TLSDYNIQKESTLHLV 232
TL Y +Q + T+H+V
Sbjct: 72 TLLSYGLQADHTVHMV 87
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 52.4 bits (120), Expect = 2e-07
Identities = 21/66 (31%), Positives = 38/66 (57%)
Frame = +2
Query: 35 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 214
++ G +++ T+E+ K + +P NQQRLI+ G+ L+D +TL Y +Q +
Sbjct: 22 IRCSNGTKFSVKTSLDSTVESFKELVAQSSDVPANQQRLIYKGRILKDDQTLLSYGLQAD 81
Query: 215 STLHLV 232
T+H+V
Sbjct: 82 HTIHMV 87
>At4g02970.1 68417.m00404 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 270
Score = 50.4 bits (115), Expect = 9e-07
Identities = 25/69 (36%), Positives = 40/69 (57%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
M +++ T TG + ++ ++ +T+ +K KI+ +GIP ++Q L GK LED DY
Sbjct: 1 MNVYIDTETGSSFSITIDFGETVLEIKEKIEKSQGIPVSKQILYLDGKALEDDLHKIDYM 60
Query: 203 IQKESTLHL 229
I ES L L
Sbjct: 61 ILFESRLLL 69
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 49.6 bits (113), Expect = 1e-06
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPNQQRLIFAGKQLEDGRTLS 193
M+IFVKTL G +EV+P D++ +VK I+ +G P +Q LI GK L+D T+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 194 DYNIQKES 217
+ + + S
Sbjct: 61 ENKVAENS 68
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 49.6 bits (113), Expect = 1e-06
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPNQQRLIFAGKQLEDGRTLS 193
M+IFVKTL G +EV+P D++ +VK I+ +G P +Q LI GK L+D T+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 194 DYNIQKES 217
+ + + S
Sbjct: 61 ENKVAENS 68
>At3g13235.1 68416.m01666 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 414
Score = 48.4 bits (110), Expect = 3e-06
Identities = 22/70 (31%), Positives = 43/70 (61%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
M+I V T + ITL+V+ +T+ENVKA ++ + +P QQ+L++ G ++ + LS
Sbjct: 1 MRITVMTAGEQIITLDVDSQETVENVKALLEVESNVPIQQQQLLYNGNEMGNSDKLSALG 60
Query: 203 IQKESTLHLV 232
++ + L ++
Sbjct: 61 VKDDDLLMMM 70
>At1g79650.3 68414.m09289 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 351
Score = 48.4 bits (110), Expect = 3e-06
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPNQQRLIFAGKQLEDGRTLS 193
M++ VKTL G + V PSDTI VK I+D +G P QQ LI GK L+D +L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 194 DYNIQKESTL 223
+ + +E L
Sbjct: 61 ENKVTEEGFL 70
>At1g79650.2 68414.m09288 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 365
Score = 48.4 bits (110), Expect = 3e-06
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPNQQRLIFAGKQLEDGRTLS 193
M++ VKTL G + V PSDTI VK I+D +G P QQ LI GK L+D +L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 194 DYNIQKESTL 223
+ + +E L
Sbjct: 61 ENKVTEEGFL 70
>At1g79650.1 68414.m09287 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 371
Score = 48.4 bits (110), Expect = 3e-06
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPNQQRLIFAGKQLEDGRTLS 193
M++ VKTL G + V PSDTI VK I+D +G P QQ LI GK L+D +L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 194 DYNIQKESTL 223
+ + +E L
Sbjct: 61 ENKVTEEGFL 70
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 48.4 bits (110), Expect = 3e-06
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPNQQRLIFAGKQLEDGRTLS 193
M++ VKTL G + V P+DTI VK I+D K+ P QQ LI GK L+D TL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 194 DYNIQKESTL 223
+ + +E L
Sbjct: 61 ENKVTEEGFL 70
>At4g03350.1 68417.m00457 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 263
Score = 47.6 bits (108), Expect = 6e-06
Identities = 24/67 (35%), Positives = 38/67 (56%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
M + + T TG + ++ ++ +T+ +K KI+ +GIP ++Q L GK LED DY
Sbjct: 1 MNVDIDTETGSSFSITIDFGETVLQIKEKIEKSQGIPVSKQILYLDGKALEDDLHKIDYM 60
Query: 203 IQKESTL 223
I ES L
Sbjct: 61 ILFESLL 67
>At5g11080.1 68418.m01294 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 352
Score = 47.2 bits (107), Expect = 8e-06
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQ-RLIFAGKQLEDGRTLSDY 199
++I +K L T TL VE + + ++K I G+ P +Q RL+F G+ L++ + LSDY
Sbjct: 11 IRIKIKILHSTTHTLSVERTIPVRDLKQDICYYCGVSPERQPRLLFRGRVLKNDQRLSDY 70
Query: 200 NIQKESTLHLV 232
++++ TL+LV
Sbjct: 71 HVEEGHTLYLV 81
>At4g03370.1 68417.m00459 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 295
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/69 (31%), Positives = 41/69 (59%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
M++ V+ +G T ++++ DT+ K KI+ + IP ++Q + F GK LED + +++
Sbjct: 1 MKMTVENESGSTFSIDIGLQDTVLTFKRKIEMTQRIPVSRQTIFFQGKLLEDHLDIFEWD 60
Query: 203 IQKESTLHL 229
I + LHL
Sbjct: 61 ILQNPLLHL 69
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240:
Ubiquitin family
Length = 1919
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +2
Query: 14 RVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQ-RLIFAGKQLEDGRTL 190
R M+I VK+L GK L V +++ +++AK K + ++ + GK+L+D ++L
Sbjct: 658 RGSMKIIVKSLGGKGSKLHVGIEESVSSLRAKASRKLDFKETEAVKMFYKGKELDDEKSL 717
Query: 191 SDYNIQKESTLHLV 232
+ N+Q S +HL+
Sbjct: 718 AAQNVQPNSLVHLI 731
>At4g01000.1 68417.m00135 ubiquitin family protein low similarity to
SP|P13117 Ubiquitin. {Neurospora crassa}; contains Pfam
profile PF00240: Ubiquitin family
Length = 415
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDY 199
+Q FV+ L GK++TL P E +K +I ++ IP + QRLI G Q+ DG +S
Sbjct: 9 LQFFVRLLDGKSLTLSFSSPLAYGEQIKQRIFEQTKIPTHLQRLISGGYQISDGSAIS-- 66
Query: 200 NIQKESTLHLV 232
Q ++T++LV
Sbjct: 67 --QPDATVNLV 75
>At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 566
Score = 44.4 bits (100), Expect = 6e-05
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +2
Query: 35 VKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPNQQRLIFAGKQLEDGRTLSDYNIQ 208
VKT GK VE I VK +I K G + P++Q +++ G++LED ++D
Sbjct: 115 VKTTCGKHCRFHVERGRNIGYVKKQISKKRGDFVDPDEQEILYEGEKLEDQSLINDICRN 174
Query: 209 KESTLHLV 232
+S LHL+
Sbjct: 175 DDSVLHLL 182
>At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 566
Score = 44.4 bits (100), Expect = 6e-05
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +2
Query: 35 VKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPNQQRLIFAGKQLEDGRTLSDYNIQ 208
VKT GK VE I VK +I K G + P++Q +++ G++LED ++D
Sbjct: 115 VKTTCGKHCRFHVERGRNIGYVKKQISKKRGDFVDPDEQEILYEGEKLEDQSLINDICRN 174
Query: 209 KESTLHLV 232
+S LHL+
Sbjct: 175 DDSVLHLL 182
>At4g05230.1 68417.m00789 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 206
Score = 44.0 bits (99), Expect = 7e-05
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
M +F +T +G T +E+ DT+ +K KI+ + IP ++Q L+F G L+D +
Sbjct: 1 MDVFFETRSGSTFEIELGYWDTVLEIKQKIEKYQRIPVSKQTLLFQGNVLQDHLDIEQCV 60
Query: 203 IQKESTLHL 229
I S + L
Sbjct: 61 ILNHSRIQL 69
>At5g09340.1 68418.m01082 ubiquitin, putative similar to ubiquitin
SP:P42740 from [Aglaothamnion neglectum]
Length = 79
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGK---QLEDGRTLS 193
MQ+F+ GK +EVE + TI ++K KI D G+ Q L GK ++ G T+
Sbjct: 1 MQVFIIDEDGKKYCVEVEKTTTIADMKTKIYDATGMENAYQYLEHRGKIVLEVHGGTTMD 60
Query: 194 DYNIQKESTLHL 229
DY I+ H+
Sbjct: 61 DYKIKACDIFHM 72
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQ-RLIFAGKQLEDGRTLSDY 199
M+I + L GK L V +++ ++KAK K + ++ + GK+LED ++L++
Sbjct: 500 MKIKLSNLGGKGSLLTVGREESVSSLKAKASRKLDFKETEAVKMFYMGKELEDEKSLAEQ 559
Query: 200 NIQKESTLHLV 232
N+Q S +HL+
Sbjct: 560 NVQPNSLVHLL 570
>At2g30100.1 68415.m03663 ubiquitin family protein low similarity to
SP|Q9UQ13 Leucine-rich repeat protein SHOC-2
(Ras-binding protein Sur-8) {Homo sapiens}; contains
Pfam profiles PF00240: Ubiquitin family, PF01535: PPR
repeat, PF00560: Leucine Rich Repeat
Length = 897
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +2
Query: 50 GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 229
GK+I L V P T++++K+++Q + P Q+LIF GK L + TL ++ + L L
Sbjct: 544 GKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLML 603
Query: 230 V 232
+
Sbjct: 604 M 604
>At5g16090.1 68418.m01880 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 142
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPNQQRLIFAGKQLEDGRTLS 193
M+I VKTL G +EV+P+D++ VK I+ G P QQ LI ++L D T+
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 194 DYNIQKESTLHLV 232
+ +S + ++
Sbjct: 61 ANKVFDKSVIAII 73
>At3g06455.1 68416.m00747 splicing factor-related contains weak
similarity to Swiss-Prot:Q12874 splicing factor 3A
subunit 3 (Spliceosome associated protein 61, SAP 61,
SF3a60) [Homo sapiens]
Length = 366
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEV-EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDY 199
+Q FV+ L GK++TL P E +K +I ++ IP + QRLI G Q+ +S
Sbjct: 9 LQFFVRLLDGKSVTLTFSSPIACGEQIKQRIFEQTKIPTHLQRLISGGFQIPGASAIS-- 66
Query: 200 NIQKESTLHLV 232
Q ++T++LV
Sbjct: 67 --QSDTTMNLV 75
>At4g03360.1 68417.m00458 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 284
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/69 (28%), Positives = 39/69 (56%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
+++ ++ +G + T++V DT+ +K KI+ +G P ++Q LIF K L+D +
Sbjct: 2 IKVIIENQSGSSFTIDVSFWDTVLMIKRKIEMTQGTPVSKQILIFKRKVLQDHLNMFGCQ 61
Query: 203 IQKESTLHL 229
I+ S + L
Sbjct: 62 IRHNSRILL 70
>At5g24240.1 68418.m02852 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain, Pfam profile
PF00454: Phosphatidylinositol 3- and 4-kinase
Length = 574
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +2
Query: 29 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKE---GIPPNQQRLIFAGKQLEDGRTLSDY 199
I V+T+ GK L VE S + VK +I KE GIP + + L G++L+D R ++D
Sbjct: 111 ISVRTVDGKEFELVVERSRNVGYVKQQIASKEKELGIPRDHE-LTLDGEELDDQRLITDL 169
Query: 200 NIQKESTLHLV 232
++ +HL+
Sbjct: 170 CQNGDNVIHLL 180
>At4g02950.1 68417.m00402 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 318
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/69 (28%), Positives = 38/69 (55%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
+ + ++ +G + T++V DT+ +K KI+ +G P ++Q LIF K L+D +
Sbjct: 36 ISVIIENQSGSSFTIDVSFWDTVLMIKRKIEMTQGTPVSKQILIFKRKVLQDHLNMFGCQ 95
Query: 203 IQKESTLHL 229
I+ S + L
Sbjct: 96 IRHNSRILL 104
>At1g53980.1 68414.m06149 polyubiquitin-related contains similarity
to polyubiquitin GI:166336 from (Aglaothamnion
neglectum)
Length = 91
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 136
M IFV TL GKT LEV+ S+ I+ VK I D+ +PP
Sbjct: 49 MSIFVSTLKGKTFNLEVKGSEIIQQVKNMIHDQ--VPP 84
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVK 103
M+I +KT GKTI LE+E S ++K
Sbjct: 1 MKILIKTEKGKTINLELEDSSETIDIK 27
>At4g05250.1 68417.m00793 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 318
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED 178
M +F +T +G +E+ DT+ +K KI+ + IP ++Q LIF G L+D
Sbjct: 1 MDVFFETQSGDKFEIELGYWDTMLEIKEKIEKYQCIPVSKQTLIFQGVVLQD 52
>At4g05310.1 68417.m00809 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 415
Score = 37.1 bits (82), Expect = 0.009
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAG 163
M+ V+ L G + +EVE +DT+ VK KI+ + +P ++Q LI G
Sbjct: 1 MKFVVEILGGSSFEIEVERTDTLLVVKQKIEKSQRVPVSKQTLIVDG 47
>At4g05270.1 68417.m00797 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 129
Score = 37.1 bits (82), Expect = 0.009
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +2
Query: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAG 163
M+ V+ L G + LEV+ DT+ VK KI+ + IP ++Q LI G
Sbjct: 1 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDG 47
>At5g14360.1 68418.m01678 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 163
Score = 34.7 bits (76), Expect = 0.045
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 65 LEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED 178
L +E + T +K + G+ P QQRL+F GK+ ED
Sbjct: 83 LSIEATSTFGELKMVLSLLTGLEPKQQRLVFKGKERED 120
>At1g26270.1 68414.m03205 phosphatidylinositol 3- and 4-kinase
family protein similar to phosphatidylinositol 4-kinase
type-II beta [Homo sapiens] GI:20159767; contains Pfam
profile PF00454: Phosphatidylinositol 3- and 4-kinase
Length = 630
Score = 34.3 bits (75), Expect = 0.060
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 20 KMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
+ ++FV+T TG + LE++ SD VK K+Q P + L F L++ T
Sbjct: 40 RRRVFVQTETGCVLGLELDRSDNAHTVKRKLQVALNFPIEESSLTFGDLVLKNDLT 95
>At1g11970.1 68414.m01383 hypothetical protein
Length = 99
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +2
Query: 14 RVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 133
R + ++ + L+ K I +E++P D IE +K I+++ GIP
Sbjct: 40 RQRFKVKSQFLSEKKIDIEIDPMDKIEQIKEGIEEEIGIP 79
>At5g40630.1 68418.m04932 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 165
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 35 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED 178
V T++ + + ++ + T +K I GI +QRL+F GK+ ED
Sbjct: 83 VSTVSQLSYEISIDANSTFGELKMMIAIVSGIEAKEQRLLFRGKERED 130
>At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N
domain-containing protein low similarity to NUB1
(NEDD8-interacting protein) [Homo sapiens] GI:13383476;
contains Pfam profile PF00627: UBA/TS-N domain
Length = 562
Score = 31.5 bits (68), Expect = 0.42
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +2
Query: 65 LEVEPSD-TIENVKAKIQDKEGIPPNQQRLIFAGKQLEDG----RTLSDYNIQKESTL 223
LEVE + T+ ++ ++ + G+ P +LIFAGK L+D TLS I++ S +
Sbjct: 14 LEVELENWTLNMLRDEVAKRSGLDPESIKLIFAGKILKDDGDATLTLSQLGIKENSKI 71
>At1g64470.1 68414.m07309 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 213
Score = 31.5 bits (68), Expect = 0.42
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +2
Query: 29 IFVKTLTGKTITLEVEPSDTIENVKAKI-QDKEGIPP-NQQRLIFAGKQLEDGRTLSDYN 202
+ V T GK V+ + +K +I ++ +G P + Q ++F G++L+D R +
Sbjct: 113 VTVITTCGKVFQFHVDRRRNVGYLKKRISKEGKGFPEVDDQEILFKGEKLDDNRIIDGIC 172
Query: 203 IQKESTLHLV 232
S +HL+
Sbjct: 173 KDGNSVIHLL 182
>At3g14130.1 68416.m01787 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative similar to Chain A,
Glycolate Oxidase (E.C.1.1.3.15) Mutant With Tyr 24
Replaced By Phe (Y24f) gi|999542
Length = 363
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -2
Query: 232 HQVEGGF--LLDIVVREGTSIFQLLSSKDQPLLIGRDSLFVL 113
H V+G LLD VR GT +F+ L+ Q +LIGR ++ L
Sbjct: 272 HAVKGRIPVLLDGGVRRGTDVFKALALGAQAVLIGRPIVYGL 313
>At1g22050.1 68414.m02758 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 119
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Frame = +2
Query: 80 SDTIENVKAKI-----QDKEGIPP--NQQRLIFAGKQLEDGRTLSD 196
S T+ ++K K+ +DKE P N +LI AGK LE+ RTL++
Sbjct: 28 SMTVSSLKEKLISQWPKDKENTPKTVNDMKLINAGKILENNRTLAE 73
>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / ubiquitin family protein
similar to SP|Q15459 Splicing factor 3 subunit 1
(Spliceosome associated protein 114) {Homo sapiens};
contains Pfam profiles PF00240: Ubiquitin family,
PF01805: Surp module
Length = 785
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 80 SDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 205
S+ + ++K KI + IP N+Q+L L+D +L+ YN+
Sbjct: 726 SENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNV 767
>At5g12280.1 68418.m01444 hypothetical protein
Length = 419
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 53 KTITLEVEP-SDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 205
K + + V+ S+ + ++K KI + P N+Q+L L+D +L+ YN+
Sbjct: 357 KVVKITVQSLSENVASLKEKISGEIQFPTNKQKLRGKAGFLKDNTSLAHYNV 408
>At3g14150.1 68416.m01789 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative similar to
(S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate
oxidase, GOX) (Short chain alpha-hydroxy acid oxidase)
[Spinacia oleracea] SWISS-PROT:P05414
Length = 363
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -2
Query: 211 LLDIVVREGTSIFQLLSSKDQPLLIGRDSLFVL 113
LLD VR GT +F+ L+ Q +LIGR ++ L
Sbjct: 281 LLDGGVRRGTDVFKALALGAQAVLIGRPIIYGL 313
>At1g47680.1 68414.m05297 hypothetical protein
Length = 104
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 74 EPSDTIENVKAKIQDKEG-IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 229
E D +E++ K ++ G + +L +G+Q+ R L DY +Q E+T L
Sbjct: 31 EEDDGMEDITKKYHNEVGEVVQGVPQLRRSGRQISQSRYLEDYVMQSETTYGL 83
>At2g25840.2 68415.m03101 tRNA synthetase class I (W and Y) family
protein contains Pfam profile: PF00579 tRNA synthetases
class I (W and Y)
Length = 412
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 504 LEGTYLFVVVFEDHRAVTLPAVVTVLHHRHEHSGAALLACAL 379
L+ TY + + DH A+TLP L + A LAC +
Sbjct: 92 LQDTYETLFIIVDHHAITLPYDTRQLGKATTDTAALYLACGI 133
>At2g25840.1 68415.m03100 tRNA synthetase class I (W and Y) family
protein contains Pfam profile: PF00579 tRNA synthetases
class I (W and Y)
Length = 408
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 504 LEGTYLFVVVFEDHRAVTLPAVVTVLHHRHEHSGAALLACAL 379
L+ TY + + DH A+TLP L + A LAC +
Sbjct: 92 LQDTYETLFIIVDHHAITLPYDTRQLGKATTDTAALYLACGI 133
>At4g18360.1 68417.m02723 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative similar to
(S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate
oxidase, GOX) (Short chain alpha-hydroxy acid oxidase)
[Spinacia oleracea] SWISS-PROT:P05414
Length = 368
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 208 LDIVVREGTSIFQLLSSKDQPLLIGRDSLFVL 113
LD VR GT +F+ L+ + +GR SLF L
Sbjct: 284 LDGGVRRGTDVFKALALGASGVFVGRPSLFSL 315
>At2g20420.1 68415.m02383 succinyl-CoA ligase [GDP-forming]
beta-chain, mitochondrial, putative / succinyl-CoA
synthetase, beta chain, putative / SCS-beta, putative
identical to SP|O82662 Succinyl-CoA ligase [GDP-forming]
beta-chain, mitochondrial precursor (EC 6.2.1.4)
(Succinyl-CoA synthetase, beta chain) (SCS- beta)
{Arabidopsis thaliana}; similar to SP|O97580
Succinyl-CoA ligase [ADP-forming] beta-chain,
mitochondrial precursor (EC 6.2.1.5) {Sus scrofa};
contains Pfam profiles PF00549: CoA-ligase, PF02222:
ATP-grasp domain
Length = 421
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 80 SDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 232
+ ++E VK IQD + PN+ L+ + L GR L + + +H+V
Sbjct: 51 ASSLEEVKKAIQD---VFPNESELVVKSQILAGGRGLGTFKSGLKGGVHIV 98
>At1g78020.1 68414.m09092 senescence-associated protein-related
similar to senescence-associated protein SAG102
(GI:22331931) [Arabidopsis thaliana]
Length = 162
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 120 KRESLPINRG*SLLESSWKMDVPSRTTISRRNPPS 224
KR+ PINR SL E + +++PS + S + P+
Sbjct: 5 KRQRPPINRTTSLSEIKFDLNLPSESEPSNQQKPT 39
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,234,409
Number of Sequences: 28952
Number of extensions: 247138
Number of successful extensions: 801
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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