Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20122
         (642 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4A7Y7 Cluster: ABC transporter permease protein; n=5; ...    33   5.9  
UniRef50_Q9FZT0 Cluster: P1; n=1; Pseudomonas phage phi13|Rep: P...    33   5.9  
UniRef50_A1Z8W1 Cluster: CG13164-PA, isoform A; n=4; Drosophila ...    33   5.9  
UniRef50_A2U5Y3 Cluster: Methyl-accepting chemotaxis sensory tra...    33   7.7  

>UniRef50_Q4A7Y7 Cluster: ABC transporter permease protein; n=5;
           Mycoplasma hyopneumoniae|Rep: ABC transporter permease
           protein - Mycoplasma hyopneumoniae (strain 7448)
          Length = 279

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +3

Query: 69  FHFFNMFFLYFGIP--NSTRFIST*INEL*IFTKY*MLLCSNIQISDSSIVV 218
           F FFN F+LY  I      +F    I++L IFTK+ +++   I+IS   +++
Sbjct: 153 FSFFNFFYLYRSIKKIEKKQFFLAKIDKLSIFTKFKLIIFPKIKISYYLLII 204


>UniRef50_Q9FZT0 Cluster: P1; n=1; Pseudomonas phage phi13|Rep: P1 -
           Pseudomonas phage phi13
          Length = 801

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -3

Query: 529 GGVLEFYSSRDHLTVGPLALSPTATYSPVLSPLSRHSQEEMGWMYYSPTFLVKYISTLTR 350
           GG LE     + +  GP  ++PT T +P   PL  H +    W +   +  VK+  T T 
Sbjct: 571 GGRLETSEPLERIAYGP-DITPTLTVTPPALPLRDHERSLHVWNWADTSTKVKFEDTFTT 629

Query: 349 T 347
           T
Sbjct: 630 T 630


>UniRef50_A1Z8W1 Cluster: CG13164-PA, isoform A; n=4; Drosophila
           melanogaster|Rep: CG13164-PA, isoform A - Drosophila
           melanogaster (Fruit fly)
          Length = 832

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -2

Query: 374 QIYIYLNKNRTLLNPVRNSMGCVSNSLLDLTGTVSGSKRKVEGDSRYALFILHHNRRIRY 195
           Q+Y  +++  TL+N V N +        +L GT++  +R+V         +   N R+  
Sbjct: 588 QMYYQVSEKETLINQVNNKLSSKEEEFYNLYGTLTHKQREVRRQEHIIKLLKEQNSRVSL 647

Query: 194 L 192
           L
Sbjct: 648 L 648


>UniRef50_A2U5Y3 Cluster: Methyl-accepting chemotaxis sensory
           transducer; n=1; Bacillus coagulans 36D1|Rep:
           Methyl-accepting chemotaxis sensory transducer -
           Bacillus coagulans 36D1
          Length = 691

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +3

Query: 186 NIQISDSSIVVKNEQCIAAVALDFPFGSTHRS--RQIQQRVRNTTH*VSHRIQQSPVLVK 359
           +I+    S+  +N+Q  +A  +DF  G  H S   ++   VRNT       +Q+ P L  
Sbjct: 98  DIEAEIKSVQTRNKQLASAYYMDFQTGKLHISPYAKLNLDVRNTN--TYRYLQKKPQLQW 155

Query: 360 VDIYLTKKVG 389
           +DIY  K  G
Sbjct: 156 MDIYKDKVTG 165


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 643,439,325
Number of Sequences: 1657284
Number of extensions: 13016137
Number of successful extensions: 31724
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31718
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)