Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20122
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.1  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 626 YFCRETVIHSVLKGGAAVLLCN 561
           Y+  E V   V++G  AVL CN
Sbjct: 124 YYEAEVVSEYVIRGNTAVLKCN 145


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 487 VGPLALSPTATYSPVLSP 434
           VGPL  S  A++SP+ +P
Sbjct: 420 VGPLLTSALASWSPLTNP 437


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +2

Query: 263 WIHSPFPSNPTKSSKHNPLSFSPDS-AKSC 349
           W H  F ++ T     NP   SPD  A++C
Sbjct: 83  WKHLDFRNSATAELLKNPSLSSPDECARAC 112


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +2

Query: 263 WIHSPFPSNPTKSSKHNPLSFSPDS-AKSC 349
           W H  F ++ T     NP   SPD  A++C
Sbjct: 83  WKHLDFRNSATAELLKNPSLSSPDECARAC 112


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,811
Number of Sequences: 336
Number of extensions: 3515
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)