Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20122
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0461 + 29553709-29554905,29555051-29555296,29555387-295554... 30 1.8
05_01_0407 + 3208818-3210218 29 2.4
08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579 29 3.1
10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878 28 5.5
06_03_0741 - 24016204-24016298,24016408-24016525,24016805-240169... 28 5.5
05_01_0297 - 2314687-2316021 28 5.5
04_04_0363 + 24720054-24720132,24720307-24720804,24720902-247214... 28 7.2
12_02_0923 - 24392892-24394148 27 9.6
09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116 27 9.6
03_05_0346 + 23335753-23335854,23336268-23336473,23336530-233367... 27 9.6
>01_06_0461 +
29553709-29554905,29555051-29555296,29555387-29555464,
29555557-29555657,29555745-29555940,29556022-29556147,
29556231-29556416,29556921-29557034,29557522-29557674,
29558287-29558475,29558568-29558645,29558728-29558853,
29558942-29559040,29559315-29559432,29559531-29559625
Length = 1033
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 518 KNATTYLKTLVLSINYIAKRLPHPSKQNVLLFRGRNRTV 634
K T K +L+ NY+AKRL K +LFRG N TV
Sbjct: 841 KGLTDASKIAILNANYMAKRL---EKHYPVLFRGVNGTV 876
>05_01_0407 + 3208818-3210218
Length = 466
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 6/31 (19%)
Frame = +3
Query: 459 AVGERANG----PTVK--WSREL*NSRTPPL 533
AVGE A G PTVK W+REL ++R PPL
Sbjct: 180 AVGEFARGVPGAPTVKPVWARELLSARRPPL 210
>08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579
Length = 824
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 233 HSGCRPRLSFWIHSPFPSN 289
H R R+ F++HSPFPS+
Sbjct: 187 HKSPRARIGFFLHSPFPSS 205
>10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878
Length = 947
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +2
Query: 236 SGCRPRLSFWIHSPFPSNPTKSSKHNPLSFSPDSAKSCSC*GRYIFD*KSRTIIH----P 403
+ RP W +P S+P+ S+ S +PDS++ G I + + R + H P
Sbjct: 728 AAARPEEPAWSPTP-SSSPSSSASSEDSSIAPDSSRRRQREGEKIEEAERRLMYHQSAPP 786
Query: 404 PHL 412
PH+
Sbjct: 787 PHI 789
>06_03_0741 -
24016204-24016298,24016408-24016525,24016805-24016903,
24016992-24017117,24017200-24017277,24017366-24017554,
24018186-24018338,24018785-24018898,24019576-24019761,
24019845-24019970,24020053-24020248,24020338-24020438,
24020533-24020610,24020707-24020952,24021063-24022253
Length = 1031
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 518 KNATTYLKTLVLSINYIAKRLPHPSKQNVLLFRGRNRTV 634
K T K +L+ NY+ KRL K +LFRG N TV
Sbjct: 839 KGLTDASKIAILNANYMTKRL---EKHYPVLFRGVNGTV 874
>05_01_0297 - 2314687-2316021
Length = 444
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Frame = +3
Query: 456 VAVGERANG---PTVK--WSREL*NSRTPP 530
+AVGE A G PTV+ W REL ++R+PP
Sbjct: 183 LAVGELARGLPAPTVRPAWCRELLDARSPP 212
>04_04_0363 +
24720054-24720132,24720307-24720804,24720902-24721436,
24721844-24721959,24722512-24723009,24723102-24723637
Length = 753
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 493 LTVGPLALSPTATYSPVLSPLSRHSQEEM-GWMYYSPTFLVKYIST 359
L GP + P AT+ ++ P+ + GWM S T ++KY+ +
Sbjct: 584 LEEGPY-IFPDATWGVLVPPIFEDEHSPLPGWMIMSDTKVIKYVDS 628
>12_02_0923 - 24392892-24394148
Length = 418
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 354 QEQDFAESGEKLNGLCFELFVGF--DGNGEWIQKESRGRQPL 235
++Q +A +K G FE+F DG+G+W++ +S G Q +
Sbjct: 293 RQQYYAGDMDKTRG--FEVFAAVISDGHGQWVKVDSLGDQAI 332
>09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116
Length = 886
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 230 MHSGC-RPRLSFWIHSPFPS 286
+ GC R R+ F++HSPFPS
Sbjct: 209 LRRGCPRCRVGFFLHSPFPS 228
>03_05_0346 +
23335753-23335854,23336268-23336473,23336530-23336705,
23336832-23337064,23337546-23337963,23338045-23338262,
23338905-23339168
Length = 538
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +2
Query: 482 PDC*VVTGAIEFKNATTYLKTLVLSINYIAKRLPHPSKQNVLLFRGRNR 628
P+ + ++ N ++ +LV++ +Y PH S+ L + G+NR
Sbjct: 218 PEIPLYVTTMKHSNVNSHHASLVIAKHYACAYFPHTSQTITLKWHGKNR 266
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,906,152
Number of Sequences: 37544
Number of extensions: 341734
Number of successful extensions: 822
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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