Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20122
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024796-2|AAK29892.2|  446|Caenorhabditis elegans Hypothetical ...    28   4.9  
AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical ...    28   6.5  

>AC024796-2|AAK29892.2|  446|Caenorhabditis elegans Hypothetical
           protein Y48G1C.4 protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = +3

Query: 195 ISDSSIVVKNEQCIAAVALD-FPF-GSTHRSRQ-IQQRVRNTTH*VSHRIQQSPVLVKVD 365
           ++DSS +V+NEQ + +   D  P+ GS H  R+ ++ RV           + S   +  D
Sbjct: 182 VADSSFIVENEQLVPSPKCDVHPYLGSAHLYREMLKTRVNRVIEKYKESRKTSSNCMSAD 241

Query: 366 --IYLTKKVGL*YIH 404
             IY   ++GL  IH
Sbjct: 242 TWIYPVLQMGLLGIH 256


>AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical
           protein F52G3.4 protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 300 LFVGFDGNGEWIQKESRGRQPLCIVHSSPQSTNPIF 193
           LF+ F GN EW + +   ++  C  + +P   N +F
Sbjct: 823 LFITFTGNPEWKEIQEYTKEKNCKWYHAPAFVNAVF 858


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,928,908
Number of Sequences: 27780
Number of extensions: 314027
Number of successful extensions: 720
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)