Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20122
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   0.47 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.82 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   4.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   7.7  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 505 SYRIQERHHLP*DISSKYQLH 567
           S+RIQ     P  ++SKY+LH
Sbjct: 345 SFRIQHHFFYPDPLASKYELH 365


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 499 DHLTVGPLALSPTATYSPVLSPLSRH 422
           D+LT   LA  P     P +SP SRH
Sbjct: 729 DYLTDTVLAYKPKILGKPTISPDSRH 754


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 348 QDFAESGEKLNGLCFELFVGFDGNGEWIQKESRGRQPLCIVHSSPQSTNPI 196
           Q  A++  K NG+ F   VG    G W + +S  RQ L +V  + ++   I
Sbjct: 303 QSLAKAVSK-NGVLFVGLVGNSAVGCWNEHQSLQRQNLEMVAQNDRTLQMI 352


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 535 VSGGVLEFYSSRDHLTVGPL 476
           V GG++  +  +D LT GP+
Sbjct: 118 VLGGLMMVHERQDRLTCGPV 137


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 403 WMYYSPTFLVKY 368
           W+Y+ P FL+ Y
Sbjct: 223 WVYFVPLFLIIY 234


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = -2

Query: 497 PLNSRAVSSFAHRYLFSGPQSPFTTLSRRDGVDVL*SDFFSQIYIYLNKNRTLLNPVRNS 318
           PL S A+ S ++       Q+  T + + D   +  S   + +  YL KN+T+  P++ S
Sbjct: 198 PLCSFAIESISYE------QTAITYVWKNDEGTLRKSPSLTSLNAYLIKNQTITCPIKVS 251

Query: 317 MGCVSNSLLD 288
                  ++D
Sbjct: 252 WRADGQIMVD 261


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 403 WMYYSPTFLVKY 368
           W+Y+ P FL+ Y
Sbjct: 99  WVYFVPLFLIIY 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,541
Number of Sequences: 438
Number of extensions: 4150
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)