Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20121
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    26   4.4  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    25   7.7  

>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +3

Query: 555 LNTIICIYYIYQAA 596
           LNTI+CI+Y+Y+ A
Sbjct: 36  LNTIVCIFYVYKIA 49


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 407 LQNLSLKNNILVGNWNSFTSTGAHCCRRVL 496
           L  L L  NI  GN+ S+  T A C R  L
Sbjct: 60  LSMLELATNIAKGNYTSYNVTKAFCHRAAL 89


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 421 LEK*YSSRQLEFVHEYGGTLLSTRIRRPFTASVGAAPTNAT 543
           LE+    +++E + ++  T   ++I+RP+TAS  A  +  T
Sbjct: 7   LEQLEYEKEVEEIEKWWATPKQSQIKRPYTASTVAVLSEVT 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,484
Number of Sequences: 5004
Number of extensions: 51574
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)