Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20121
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11240.1 68418.m01313 transducin family protein / WD-40 repea...    28   6.6  
At5g42760.1 68418.m05207 O-methyltransferase N-terminus domain-c...    27   8.7  
At3g04570.1 68416.m00485 DNA-binding protein-related contains Pf...    27   8.7  

>At5g11240.1 68418.m01313 transducin family protein / WD-40 repeat
           family protein contains 3 WD-40 repeats (PF00400);
           similar to uncharacterized protein KIAA0007 (GI:1663708)
           {Homo sapiens}  1.2e-11
          Length = 615

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 294 IKSLKKTHINVKLN*NHFSKDMSCFKYIFVRRRYKHE 404
           I S ++T+I  K+   H S D +C K++ + ++ K +
Sbjct: 46  IASTEETNIYTKVGKGHLSVDYTCMKWLSLEKKKKRK 82


>At5g42760.1 68418.m05207 O-methyltransferase N-terminus
           domain-containing protein contains Pfam profile PF02409:
           O-methyltransferase N-terminus
          Length = 344

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 134 NIISVKWWLFTEIFSVDFLEDPKKLRPATLFHF 36
           N+I+ K  L + +   DF+  P    P ++FHF
Sbjct: 233 NLIAEKCGLTSTVLLADFMNKPSATLPNSVFHF 265


>At3g04570.1 68416.m00485 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 315

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 472 GTLLSTRIRRPFTASVGAAPTNATI 546
           GT+ +  +R+P TA+V AAP  A +
Sbjct: 142 GTVANVTLRQPSTAAVAAAPGGAAV 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,604,997
Number of Sequences: 28952
Number of extensions: 254903
Number of successful extensions: 570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)