Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20119
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe... 34 0.020
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 28 1.3
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ... 27 1.8
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 2.3
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 27 2.3
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom... 27 3.1
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 26 4.1
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 26 4.1
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 26 4.1
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 25 7.1
>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 233
Score = 33.9 bits (74), Expect = 0.020
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 500 QNRREEAQDKKIEEIEDEFNELIDEEFLQQYQKQRLQELMAQFEK 634
+NR E ++ E+EDE D+EFLQ Y+ +R+QE Q K
Sbjct: 43 ENRLENKDLDELAELEDEE----DDEFLQMYRNKRMQEWKDQMSK 83
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 497 SQNRREEAQDKKIEEIEDEFNEL---IDEEFLQQYQKQRLQELMAQFEK 634
S +R+ EA + ++EE+E+E +L D E +Q+ + ++L + E+
Sbjct: 45 SLSRKSEAAESQLEELEEETKQLRLKADNEDIQKTEAEQLSRKVELLEE 93
>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 279
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 488 DTFSQNRREEAQDKKIEEIEDEFNELIDEEFLQQYQKQRLQELMAQFEKV 637
D ++ +A + E+ED +DE Y++QRL+ L +F +V
Sbjct: 77 DLYADTYATQAATESDSELEDALFSQLDEFDDTAYREQRLEMLKKEFARV 126
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 476 VQKTDTFSQNRREEAQDKKIEEIEDEFNELIDEEFLQQYQKQRLQELMAQFE 631
+ + F + E QD++ IE++ D L+QYQ +RL+ A E
Sbjct: 251 LHEAQKFGFDNNESDQDEEDALIEEDLGNEFDMVKLRQYQLERLRYYYAVVE 302
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 318 PNKEIKNAELPPINSWNGSATNTG 389
P +E+ +AE+P INSW ++N+G
Sbjct: 52 PIREM-DAEIPAINSWKKDSSNSG 74
>SPCC330.10 |pcm1||mRNA capping
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 389
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 69 PCTP*NSFLVPYGISYYLFM 10
P +P SF PYGI YY ++
Sbjct: 284 PESPPRSFRPPYGIQYYFYL 303
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/39 (30%), Positives = 28/39 (71%)
Frame = +2
Query: 497 SQNRREEAQDKKIEEIEDEFNELIDEEFLQQYQKQRLQE 613
S++ EEA+ KK+EE +E +++ +E ++ +K+++Q+
Sbjct: 62 SESSDEEAELKKLEEEGEEVEKILRDE--ERIKKRKIQK 98
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 503 NRREEAQDKKIEEIEDEFNELIDE-EFLQQYQKQRLQELMAQFEKV 637
NR+ D I ++DE N+L +E + + + + L EL + EK+
Sbjct: 544 NRKTSFTDSHILRLQDEVNQLRNELDLVNKRNEDLLIELQGKEEKI 589
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 503 NRREEAQDKKIEEIEDEFNELIDEEFLQQYQKQRLQELMAQFEKV 637
N R E Q++ +E++ N + Q++Q+ L E + + EKV
Sbjct: 199 NVRAEQQERLVEDVLARVNSKVST---QKFQQDALNESLGEIEKV 240
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +2
Query: 455 RKRTYCIVQKTDTFSQNRREEAQDKKIEEIEDEFNELIDEEFLQQYQKQRLQELMAQFEK 634
R+R + D+ + ++E+ K+EE +EF E E+ ++Q + + EK
Sbjct: 69 RQRKEELESHVDSEIETSKDESSVNKVEEKVEEFKEDNVEQEIKQKRSLSESPQESMLEK 128
Query: 635 VPK 643
V K
Sbjct: 129 VSK 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,415
Number of Sequences: 5004
Number of extensions: 40665
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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