Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20119
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0604 - 4493868-4494028,4494538-4494746,4495860-4496003,449...    36   0.021
03_02_0152 - 5951201-5951616,5952228-5952602,5955534-5955948           34   0.085
01_01_0171 + 1446221-1446902,1447040-1447221,1447339-1447409,144...    32   0.34 
03_05_0175 + 21513767-21513903,21534361-21535385,21537375-215375...    29   3.2  
09_02_0072 + 3895868-3895999,3897814-3897909,3898484-3898771           28   7.4  
07_03_0775 - 21413522-21413797,21414016-21414178,21414274-214143...    28   7.4  
03_05_0240 - 22263189-22263815                                         28   7.4  
03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,453...    28   7.4  

>01_01_0604 -
           4493868-4494028,4494538-4494746,4495860-4496003,
           4496298-4496539
          Length = 251

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = +2

Query: 482 KTDTFSQNRREEAQDKKI-EEIEDEFNELIDEEFLQQYQKQRLQELMAQFEKVPKF 646
           K D   Q + +E  D++  +E+ED  ++L D+ FL+QY++ RL EL  +  K  KF
Sbjct: 43  KVDADEQPKSKEWLDEREPDELEDLEDDLDDDRFLEQYRRMRLAEL-REAAKAAKF 97


>03_02_0152 - 5951201-5951616,5952228-5952602,5955534-5955948
          Length = 401

 Score = 34.3 bits (75), Expect = 0.085
 Identities = 13/45 (28%), Positives = 29/45 (64%)
 Frame = +3

Query: 378 TNTGPKGVIEDWRRFKQLEAENRAELEKERIALSKKLTLSVKTDA 512
           T++ P G+ ++WR+ K+ ++  R E++++RI     LT ++  +A
Sbjct: 148 TSSLPAGIEDEWRKRKEAQSLKRLEVKRKRIERRNSLTSNISKEA 192


>01_01_0171 +
           1446221-1446902,1447040-1447221,1447339-1447409,
           1447480-1447486,1447530-1447619,1447694-1447981,
           1448121-1448333,1448860-1449087
          Length = 586

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +2

Query: 479 QKTDTFSQNRREEAQDKK--IEEIEDEFNELIDEEFLQQYQKQRLQELMAQFEKVPK 643
           +KTD    N   + + KK  +EE+E ++NE      L++  +QR Q+L A  E++ K
Sbjct: 177 RKTDKLVANLASQVEVKKRHVEELESQYNETTAS--LERVMEQREQQLQAYNEEIRK 231


>03_05_0175 +
           21513767-21513903,21534361-21535385,21537375-21537547,
           21537849-21538679
          Length = 721

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/49 (28%), Positives = 30/49 (61%)
 Frame = +2

Query: 491 TFSQNRREEAQDKKIEEIEDEFNELIDEEFLQQYQKQRLQELMAQFEKV 637
           T S    +E +++++EE E E  E I+EE +++  ++  +E+  + E+V
Sbjct: 44  TASDEEEKEEEEEEVEEEEVEEEEEIEEEEVEEEIEEEEEEIEEEEEEV 92


>09_02_0072 + 3895868-3895999,3897814-3897909,3898484-3898771
          Length = 171

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = +3

Query: 321 NKEIK--NAELPPINSWNGSATNTGPKGVIE----DWRRFKQLEAENRAELEKERIALSK 482
           NK+ K  N+ L P+ +   S +   P GVI+    DW RFK  +    A LE + +A + 
Sbjct: 45  NKKTKVINSCLNPVWNEEMSFSIEEPAGVIKFEVFDWDRFKYDDKMGHAFLELQPVAAAA 104

Query: 483 KLTLSVK 503
           KL  +++
Sbjct: 105 KLRRALR 111


>07_03_0775 -
           21413522-21413797,21414016-21414178,21414274-21414351,
           21415983-21416176
          Length = 236

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 515 EAQDKKIEEIEDEFNELIDEEFLQQYQKQRLQELMAQFEKVPKF 646
           E+  +KI+E++ E NEL DE+   + +K+ L++ +      P F
Sbjct: 135 ESLQEKIKELKAEKNELRDEKQKLKAEKESLEQQIKFLNARPSF 178


>03_05_0240 - 22263189-22263815
          Length = 208

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 452 IRKRTYCIVQKTDTFSQNRREEAQDKKIEEIEDEFNE 562
           I    YC   K D F  NR+EE  +K + E+ DE ++
Sbjct: 55  IESPMYCHELKNDVFVVNRKEELIEKDV-EVGDEIHK 90


>03_01_0617 +
           4532651-4532893,4534713-4534939,4535077-4535150,
           4535753-4535809,4535940-4536280,4536979-4537047,
           4537152-4537219,4537404-4539569,4540101-4540178,
           4540326-4540437,4540722-4540772,4540886-4540936
          Length = 1178

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -3

Query: 324 YSAYSLLHRHFYYPHHQTRHLRCSAVIVYFLS*NLVIQSRHSELNVTKRYKAIT 163
           + A+S LH H   P  + RHL    +     S N++ Q+ HSE    K  K+I+
Sbjct: 687 WDAHSDLHAHDSSPAVKVRHLASGNLQKINQSPNVLNQAMHSERTQDKVEKSIS 740


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,492,319
Number of Sequences: 37544
Number of extensions: 234156
Number of successful extensions: 695
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)