Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20119
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125970-1|AAD14763.1|  357|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF003130-3|AAB54123.1|  849|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z77133-2|CAB00864.2|  664|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U80027-21|ABQ13061.1|  200|Caenorhabditis elegans Hypothetical p...    29   3.8  
U80027-20|AAC48113.2|  400|Caenorhabditis elegans Hypothetical p...    29   3.8  
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical...    29   3.8  
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF047655-10|AAC04396.1|  335|Caenorhabditis elegans Hypothetical...    28   6.6  
AF039713-6|AAB96723.1|  829|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z49968-11|CAN86616.1|  492|Caenorhabditis elegans Hypothetical p...    27   8.7  
Z49968-10|CAB54270.3|  490|Caenorhabditis elegans Hypothetical p...    27   8.7  
Z49968-6|CAB54272.2|  474|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AF125970-1|AAD14763.1|  357|Caenorhabditis elegans Hypothetical
           protein Y60C6A.1 protein.
          Length = 357

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/66 (31%), Positives = 34/66 (51%)
 Frame = +2

Query: 410 LAAL*TVRSGKSC*IRKRTYCIVQKTDTFSQNRREEAQDKKIEEIEDEFNELIDEEFLQQ 589
           L+ L  V +   C  R  TY I+Q  D  +     E Q+  +EE E+ FN+  DEE   +
Sbjct: 127 LSLLLLVINSVFCKKRNHTYIILQAHDK-ADKEHVELQEH-VEEPEENFNDDTDEEEHVE 184

Query: 590 YQKQRL 607
            ++Q++
Sbjct: 185 EEQQKM 190


>AF003130-3|AAB54123.1|  849|Caenorhabditis elegans Hypothetical
           protein F55A12.5 protein.
          Length = 849

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +2

Query: 479 QKTDTFSQNRREEAQDKKIEEIEDEFNELIDEEFLQQYQKQRLQE 613
           ++ D + +   +E +D+  EE E+  NE+ D++FL + Q + L E
Sbjct: 679 EEEDEYEEYEDDEDEDEYYEEEEE--NEVEDDDFLTETQLEELME 721


>Z77133-2|CAB00864.2|  664|Caenorhabditis elegans Hypothetical
           protein K03A11.4 protein.
          Length = 664

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 208 TLDDKILGEKVHNYCRAAKMTGLMMRIVEVAMKKGICRIKK*KMP 342
           T+  +I GEK  +Y R    T    R + V ++  IC+ KK K+P
Sbjct: 496 TMPREIPGEKGSSYIRKQPSTPRNCRNMPVPLQYCICQFKKSKLP 540


>U80027-21|ABQ13061.1|  200|Caenorhabditis elegans Hypothetical
           protein T28A11.2b protein.
          Length = 200

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 461 RTYC--IVQKTDTFSQ-NRREEAQDKKIEEIEDEFNELIDEEFLQQYQKQRLQE 613
           R YC  IV  T  F++ +++ E+++       D F E  +EE  +  +KQ LQE
Sbjct: 96  RNYCDGIVYVTQNFTECDKKLESKNSTCYSAWDPFPENFEEELDENKKKQMLQE 149


>U80027-20|AAC48113.2|  400|Caenorhabditis elegans Hypothetical
           protein T28A11.2a protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 461 RTYC--IVQKTDTFSQ-NRREEAQDKKIEEIEDEFNELIDEEFLQQYQKQRLQE 613
           R YC  IV  T  F++ +++ E+++       D F E  +EE  +  +KQ LQE
Sbjct: 96  RNYCDGIVYVTQNFTECDKKLESKNSTCYSAWDPFPENFEEELDENKKKQMLQE 149


>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
            protein Y39B6A.30 protein.
          Length = 1408

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +2

Query: 494  FSQNRREEAQDKKIEEIEDEFNELIDEEFLQQYQKQRLQELMAQFEKVPK 643
            F  NRR E + K+ +E E+E  +LI E    +  K+  + + A+ EKV K
Sbjct: 877  FFWNRRREEKCKE-KEAEEENEKLIPERKRMEAIKEEEERVKAEREKVKK 925


>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical
           protein ZK593.5 protein.
          Length = 1326

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
 Frame = +2

Query: 473 IVQKTD-TFSQNRREEAQDKKIEEIEDEFNELIDEEFLQQYQKQRLQELMAQFEKV 637
           + Q TD  F+   R    ++ IE++E+  +  +DE+ L + QKQ++++LM + E++
Sbjct: 518 VTQLTDKNFNMEERIMQLEETIEDMEEARD--LDEQ-LAEVQKQQVKDLMKEIEQL 570


>AF047655-10|AAC04396.1|  335|Caenorhabditis elegans Hypothetical
           protein C17B7.2 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +2

Query: 461 RTYC--IVQKTDTFSQ-NRREEAQDKKIEEIEDEFNELIDEEFLQQYQKQRLQE 613
           R YC  IV  T  F++ +++ E+++       D F E  +EE  ++ +K+ LQE
Sbjct: 74  RNYCDGIVYVTQNFTECDKKLESKNSTCYSAWDPFPENFEEELDEKKKKEMLQE 127


>AF039713-6|AAB96723.1|  829|Caenorhabditis elegans Hypothetical
           protein F57B10.6 protein.
          Length = 829

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 500 QNRREEAQDKKIEEIEDEFNELIDEEFLQQ 589
           ++++EE + KK + IED+  E+ D+E + Q
Sbjct: 381 EDKKEEEKRKKEQRIEDDMIEVSDDEMVLQ 410


>Z49968-11|CAN86616.1|  492|Caenorhabditis elegans Hypothetical
           protein M110.5d protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 494 FSQNRREEAQDKKIEEIEDEFNELIDEEFL 583
           F  N+ E   +KK+  +E+ F +L+D + L
Sbjct: 405 FGDNKAETWSEKKVTSLEEAFTKLVDMDAL 434


>Z49968-10|CAB54270.3|  490|Caenorhabditis elegans Hypothetical
           protein M110.5a protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 494 FSQNRREEAQDKKIEEIEDEFNELIDEEFL 583
           F  N+ E   +KK+  +E+ F +L+D + L
Sbjct: 403 FGDNKAETWSEKKVTSLEEAFTKLVDMDAL 432


>Z49968-6|CAB54272.2|  474|Caenorhabditis elegans Hypothetical
           protein M110.5c protein.
          Length = 474

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 494 FSQNRREEAQDKKIEEIEDEFNELIDEEFL 583
           F  N+ E   +KK+  +E+ F +L+D + L
Sbjct: 387 FGDNKAETWSEKKVTSLEEAFTKLVDMDAL 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,373,763
Number of Sequences: 27780
Number of extensions: 228975
Number of successful extensions: 1048
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)