Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20119
(647 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14240.1 68418.m01664 expressed protein 34 0.071
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 32 0.29
At1g13220.1 68414.m01533 nuclear matrix constituent protein-rela... 32 0.29
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 31 0.66
At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family pr... 31 0.87
At1g32830.1 68414.m04046 hypothetical protein similar to At2g049... 30 1.5
At5g51650.1 68418.m06404 hypothetical protein 29 2.7
At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,... 29 3.5
At5g61070.1 68418.m07663 histone deacetylase family protein (HDA... 28 4.7
At5g54680.1 68418.m06809 basic helix-loop-helix (bHLH) family pr... 28 6.1
At3g44805.1 68416.m04827 hypothetical protein 28 6.1
At3g11100.1 68416.m01343 expressed protein similar to 6b-interac... 28 6.1
At1g65010.1 68414.m07368 expressed protein similar to endosome-a... 28 6.1
At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondr... 27 8.1
At1g35470.2 68414.m04401 SPla/RYanodine receptor (SPRY) domain-c... 27 8.1
At1g35470.1 68414.m04400 SPla/RYanodine receptor (SPRY) domain-c... 27 8.1
>At5g14240.1 68418.m01664 expressed protein
Length = 256
Score = 34.3 bits (75), Expect = 0.071
Identities = 13/35 (37%), Positives = 28/35 (80%)
Frame = +2
Query: 512 EEAQDKKIEEIEDEFNELIDEEFLQQYQKQRLQEL 616
++ ++++E++ED+ +L D+ FL++Y+K+RL EL
Sbjct: 57 DKKTEEELEDLEDD-KDLDDDRFLEEYRKKRLSEL 90
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +3
Query: 348 PPINSWNGSATNTGPKGVIE--DWRRFKQLEAENRAELE-KERIALSKKLT 491
PPI + G + G ++ DWRRF+++ N A +E K++ AL +K++
Sbjct: 40 PPIGTLTGQGVSRGHTDDMDMGDWRRFREVGLLNEASMEKKDQEALLEKIS 90
>At1g13220.1 68414.m01533 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 391
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +3
Query: 348 PPINSWNGSATNTGPKGVIE--DWRRFKQLEAENRAELE-KERIALSKKLT 491
PPI + G + G ++ DWRRF+++ N A +E K++ AL +K++
Sbjct: 53 PPIGTLTGQGVSRGHTDDMDMGDWRRFREVGLLNEASMEKKDQEALLEKIS 103
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 491 TFSQNRREEAQDKKIEEIEDEFNELIDEEFLQQYQKQRLQELMAQFEKV 637
T ++ R Q + EE+E E ++EE ++ + L+EL AQ+++V
Sbjct: 412 TTAEGRLRARQKRNEEELEKEKRNQLEEERRRENPESYLEELQAQYKEV 460
>At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GI:3757520
from [Arabidopsis thaliana]
Length = 226
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +2
Query: 527 KKIEEIEDEFNELIDEEFLQQYQKQRLQELMAQFEKVPK 643
+KI+E++DE NEL DE+ + +K+R+ + + + P+
Sbjct: 133 EKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQPQ 171
>At1g32830.1 68414.m04046 hypothetical protein similar to At2g04970,
At2g15200, At2g14140, At3g30450, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 707
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/30 (36%), Positives = 24/30 (80%)
Frame = +2
Query: 509 REEAQDKKIEEIEDEFNELIDEEFLQQYQK 598
REE +++K+EE DE+N+++ EE ++++ +
Sbjct: 451 REEGKEEKVEE-HDEYNDVLKEENVKEHDE 479
>At5g51650.1 68418.m06404 hypothetical protein
Length = 206
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Frame = +2
Query: 509 REEAQDKKIEEIEDEFNELI-----DEEFLQQYQKQRLQELMAQFEK 634
+E+ +DKK EE ED+F I D L KQ+L++L+ +FEK
Sbjct: 127 KEKKKDKKKEEEEDDFGSKIKLTTADLRKLAN-DKQQLKKLLREFEK 172
>At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,
putative similar to SP|Q03460 Glutamate synthase [NADH],
chloroplast precursor (EC 1.4.1.14) (NADH- GOGAT)
{Medicago sativa}
Length = 2208
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 5/43 (11%)
Frame = +2
Query: 533 IEEIEDEFNELIDEEFLQQYQK----QRLQELMAQFEK-VPKF 646
++++EDE +++ + +QQ+Q+ Q QE++A FE +PKF
Sbjct: 1579 LDKVEDEEDKMTLKMMIQQHQRHTNSQLAQEVLADFENLLPKF 1621
>At5g61070.1 68418.m07663 histone deacetylase family protein (HDA18)
identical to HDA18 [Arabidopsis thaliana] GI:21105769;
similar to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo
sapiens}; contains Pfam profile PF00850: Histone
deacetylase family
Length = 682
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 494 FSQNRREEAQDKKIEEIEDEFNELIDEEFLQQYQ--KQRLQELMAQFEK 634
FSQ E+ ++E + EFNE +D E L+ +Q K+ ++ +F K
Sbjct: 618 FSQEFYEDMDLDELEPLSPEFNEDMDSEELEPFQVIKKNMERSHKKFIK 666
>At5g54680.1 68418.m06809 basic helix-loop-helix (bHLH) family
protein similar to unknown protein (pir |B71406)
Length = 234
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 530 KIEEIEDEFNELIDEEFLQQYQKQRL-QELMAQFEKVPKF 646
KI+E++ E NEL DE+ + +K++L Q+L A P F
Sbjct: 139 KIKELKTEKNELRDEKQRLKTEKEKLEQQLKAMNAPQPSF 178
>At3g44805.1 68416.m04827 hypothetical protein
Length = 248
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 524 DKKIEEIEDEFNELIDEEFLQQYQKQRLQELMAQFE 631
D K++ +E + E+ +++ +Q K R+QEL +FE
Sbjct: 128 DFKVDWLERKLEEVKEKKIEEQIGKTRMQELEEEFE 163
>At3g11100.1 68416.m01343 expressed protein similar to
6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum]
GI:18149189
Length = 249
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +3
Query: 333 KNAELPPINSWNGSATNTGPKGVIEDWRRFKQLEAENRA---ELEKERIALSKKLTL 494
K+ ++ ++S GSA + +++ F+++E + + ELEK+R+ ++K+L L
Sbjct: 164 KHRKVEDVDSSEGSAFRELARSILKLGEAFERIEGKKQQMMIELEKQRMEVAKELEL 220
>At1g65010.1 68414.m07368 expressed protein similar to
endosome-associated protein (GI:1016368) [Homo sapiens];
similar to Centromeric protein E (CENP-E protein)
(Swiss-Prot:Q02224) [Homo sapiens]
Length = 1318
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 473 IVQKTDTFSQNRREEAQDKKIEEIEDEFNELIDEEFLQQYQKQRLQEL 616
IVQ++ + RE A KKIEE+ L+D+E Q+ Q +EL
Sbjct: 715 IVQESKDLKE--REVAYLKKIEELSVANESLVDKETKLQHIDQEAEEL 760
>At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondrial
(RPOMT) identical to SP|P92969 DNA-directed RNA
polymerase, mitochondrial precursor (EC 2.7.7.6)
{Arabidopsis thaliana}
Length = 976
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 548 DEFNELIDEEFLQQYQKQRLQELMAQFEK 634
D N ++ E+F++ Y+K L+ L+ F+K
Sbjct: 919 DVMNTILREKFVELYEKPILENLLESFQK 947
>At1g35470.2 68414.m04401 SPla/RYanodine receptor (SPRY)
domain-containing protein similar to RanBPM [Homo
sapiens] GI:15080674; contains Pfam profile PF00622:
SPRY domain
Length = 467
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 336 NAELPPINSWNGSATNTGPKG 398
N+ PP NS NG TN G G
Sbjct: 2 NSSPPPANSANGDTTNNGENG 22
>At1g35470.1 68414.m04400 SPla/RYanodine receptor (SPRY)
domain-containing protein similar to RanBPM [Homo
sapiens] GI:15080674; contains Pfam profile PF00622:
SPRY domain
Length = 465
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 336 NAELPPINSWNGSATNTGPKG 398
N+ PP NS NG TN G G
Sbjct: 2 NSSPPPANSANGDTTNNGENG 22
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,330,990
Number of Sequences: 28952
Number of extensions: 203384
Number of successful extensions: 868
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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