Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20117
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo...    30   0.40 
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   2.1  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    26   6.6  

>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -1

Query: 257 SLNNHLNQVRFHSNLDSIDR 198
           SLN+HLNQ   HS+LD +D+
Sbjct: 30  SLNSHLNQFIVHSSLDIVDQ 49


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = -2

Query: 565 NIYMSVGLPTPVAGALMIRSLWG*EIIMLILNAQRSGGIQLVIY 434
           +IY SV +PTP+ G+L+   L G E+I  + +A R+ GI +  Y
Sbjct: 293 DIYASVSIPTPLGGSLL---LGGNELI-YVDSAGRTVGIGVNSY 332


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = +3

Query: 399 LCNSYYVKPLILYITNCIPPLRWAFKINII 488
           LCNS   KP    IT  IPP   AF I+II
Sbjct: 532 LCNSIEGKPTTSKITPSIPP---AFDIHII 558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,012
Number of Sequences: 5004
Number of extensions: 56678
Number of successful extensions: 158
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)